RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 APOL4Q9BPW4 351 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 ADI1Q9BV57 179 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 IFT27Q9BW83 186 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 PRRG4Q9BZD6 226 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 PRRG3Q9BZD7 231 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 INIPQ9NRY2 104 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 PARPBPQ9NWS1 579 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 GRHPRQ9UBQ7 328 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 ZNF346Q9UL40 294 aaKnown RBP6.58□□□□□ -1.36
CD44-228ENST00000528455 MCTS1Q9ULC4 181 aaKnown RBP6.58□□□□□ -1.36
CD44-228ENST00000528455 CAMK2AQ9UQM7 478 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 GMPPBQ9Y5P6 360 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.58□□□□□ -1.36
CD44-228ENST00000528455 ARHGAP21Q5T5U3 1957 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 SHANK1Q9Y566 2161 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 ZGRF1Q86YA3 2104 aa6.58□□□□□ -1.36
CD44-228ENST00000528455 USP9XQ93008 2570 aaPredicted RBP6.58□□□□□ -1.36
CD44-228ENST00000528455 IGKV3D-15A0A087WSY6 115 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 TRBV23-1A0A0A0MS06 115 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 A6NIZ1 184 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 ZNF716A6NP11 495 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 ZNF724A8MTY0 619 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 CENPBD1B2RD01 187 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 MCIDASD6RGH6 385 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 M0R3G1 203 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 PRRG2O14669 202 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 SMAD9O15198 467 aaKnown RBP6.57□□□□□ -1.36
CD44-228ENST00000528455 AGFG2O95081 481 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 SOX14O95416 240 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 BCL10O95999 233 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 IGHMP01871 453 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 YES1P07947 543 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 MYF6P23409 242 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 SDHAP31040 664 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 DAP3P51398 398 aaKnown RBP6.57□□□□□ -1.36
CD44-228ENST00000528455 RAP1BP61224 184 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 SNRPGP62308 76 aaKnown RBP6.57□□□□□ -1.36
CD44-228ENST00000528455 RAP1AP62834 184 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 HSF1Q00613 529 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 MED21Q13503 144 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 C1DQ13901 141 aaKnown RBP6.57□□□□□ -1.36
CD44-228ENST00000528455 SNAPC1Q16533 368 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 EIF2S3LQ2VIR3 472 aaKnown RBP6.57□□□□□ -1.36
CD44-228ENST00000528455 ARMC4Q5T2S8 1044 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 ZNF691Q5VV52 312 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 TMEM236Q5W0B7 351 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 FAM205BPQ63HN1 556 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 NSUN5P2Q63ZY6 315 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 C12orf73Q69YU5 71 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 OR2A2Q6IF42 318 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 GFRALQ6UXV0 394 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 Q6ZPB1 254 aaPredicted RBP6.57□□□□□ -1.36
CD44-228ENST00000528455 PTCHD4Q6ZW05 846 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 FAM122BQ7Z309 247 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 HDDC2Q7Z4H3 204 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 FGD2Q7Z6J4 655 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 UEVLDQ8IX04 471 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 KDM8Q8N371 416 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 ZIC4Q8N9L1 334 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 ST6GALNAC3Q8NDV1 305 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 SETD9Q8NE22 299 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 OR8D4Q8NGM9 314 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 OR6X1Q8NH79 312 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 FANK1Q8TC84 345 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 FNDC8Q8TC99 324 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 CYGBQ8WWM9 190 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 ROBO4Q8WZ75 1007 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 KISS1RQ969F8 398 aaPredicted RBP6.57□□□□□ -1.36
CD44-228ENST00000528455 DNAJA3Q96EY1 480 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 ZNF845Q96IR2 970 aaPredicted RBP6.57□□□□□ -1.36
CD44-228ENST00000528455 LRR1Q96L50 414 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 Q96MT0 163 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 MUS81Q96NY9 551 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 ERMAPQ96PL5 475 aaPredicted RBP6.57□□□□□ -1.36
CD44-228ENST00000528455 SNX18Q96RF0 628 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 DDOQ99489 341 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 TUBA1CQ9BQE3 449 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 TACO1Q9BSH4 297 aaKnown RBP6.57□□□□□ -1.36
CD44-228ENST00000528455 KATNB1Q9BVA0 655 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 POLDIP3Q9BY77 421 aaKnown RBP6.57□□□□□ -1.36
CD44-228ENST00000528455 SRXN1Q9BYN0 137 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 ANKRD60Q9BZ19 345 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 PLA2G12AQ9BZM1 189 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 FN3KQ9H479 309 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 RIBC2Q9H4K1 309 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 BCO1Q9HAY6 547 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 CMC2Q9NRP2 79 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 TBC1D23Q9NUY8 699 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 KLHL9Q9P2J3 617 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 B3GAT1Q9P2W7 334 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 SEC14L4Q9UDX3 406 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 KLHL21Q9UJP4 597 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 IER3IP1Q9Y5U9 82 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 USP9YO00507 2555 aaPredicted RBP6.57□□□□□ -1.36
CD44-228ENST00000528455 ALPK2Q86TB3 2170 aa6.57□□□□□ -1.36
CD44-228ENST00000528455 MED12LQ86YW9 2145 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 PHF3Q92576 2039 aaKnown RBP6.56□□□□□ -1.36
CD44-228ENST00000528455 SH3D21A4FU49 640 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 OR6C65A6NJZ3 312 aa6.56□□□□□ -1.36
CD44-228ENST00000528455 SLC22A20A6NK97 555 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms