RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 ADH4P08319 380 aa9.22□□□□□ -0.93
DDX41-216ENST00000513562 NQO1P15559 274 aaKnown RBP9.22□□□□□ -0.93
DDX41-216ENST00000513562 SELEP16581 610 aa9.22□□□□□ -0.93
DDX41-216ENST00000513562 CBLP22681 906 aa9.22□□□□□ -0.93
DDX41-216ENST00000513562 CDKN2CP42773 168 aa9.22□□□□□ -0.93
DDX41-216ENST00000513562 SLC6A9P48067 706 aa9.22□□□□□ -0.93
DDX41-216ENST00000513562 CSNK1A1P48729 337 aa9.22□□□□□ -0.93
DDX41-216ENST00000513562 CLNS1AP54105 237 aaKnown RBP9.22□□□□□ -0.93
DDX41-216ENST00000513562 CRISP3P54108 245 aa9.22□□□□□ -0.93
DDX41-216ENST00000513562 SEC61A1P61619 476 aaKnown RBP9.22□□□□□ -0.93
DDX41-216ENST00000513562 HOXC5Q00444 222 aa9.22□□□□□ -0.93
DDX41-216ENST00000513562 PAX8Q06710 450 aa9.22□□□□□ -0.93
DDX41-216ENST00000513562 TBC1D28Q2M2D7 210 aa9.22□□□□□ -0.93
DDX41-216ENST00000513562 TMEM255AQ5JRV8 349 aa9.22□□□□□ -0.93
DDX41-216ENST00000513562 MIER2Q8N344 545 aa9.22□□□□□ -0.93
DDX41-216ENST00000513562 SPICQ8N5J4 248 aa9.22□□□□□ -0.93
DDX41-216ENST00000513562 OR6S1Q8NH40 331 aa9.22□□□□□ -0.93
DDX41-216ENST00000513562 SLC35B4Q969S0 331 aa9.22□□□□□ -0.93
DDX41-216ENST00000513562 PANX1Q96RD7 426 aa9.22□□□□□ -0.93
DDX41-216ENST00000513562 DIRC2Q96SL1 478 aa9.22□□□□□ -0.93
DDX41-216ENST00000513562 EGLN1Q9GZT9 426 aa9.22□□□□□ -0.93
DDX41-216ENST00000513562 PRDM13Q9H4Q3 707 aa9.22□□□□□ -0.93
DDX41-216ENST00000513562 ARMC7Q9H6L4 198 aa9.22□□□□□ -0.93
DDX41-216ENST00000513562 AKTIPQ9H8T0 292 aa9.22□□□□□ -0.93
DDX41-216ENST00000513562 PATZ1Q9HBE1 687 aaKnown RBP9.22□□□□□ -0.93
DDX41-216ENST00000513562 CALML5Q9NZT1 146 aa9.22□□□□□ -0.93
DDX41-216ENST00000513562 IGHV3OR16-10A0A075B7F0 116 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 F5H0A9 414 aaPredicted RBP9.21□□□□□ -0.94
DDX41-216ENST00000513562 TSPAN15O95858 294 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 BCHEP06276 602 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 FAM153BP0C7A2 387 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 CD80P33681 288 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 S100A3P33764 101 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 MVDP53602 400 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 PUDPQ08623 228 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 HNRNPA0Q13151 305 aaKnown RBP9.21□□□□□ -0.94
DDX41-216ENST00000513562 TAF9Q16594 264 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 TMEM155Q4W5P6 130 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 RPS26P11Q5JNZ5 115 aaPredicted RBP9.21□□□□□ -0.94
DDX41-216ENST00000513562 WDR88Q6ZMY6 472 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 DPPA2Q7Z7J5 298 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 C17orf53Q8N3J3 647 aaPredicted RBP9.21□□□□□ -0.94
DDX41-216ENST00000513562 KLHL36Q8N4N3 616 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 LSMEM1Q8N8F7 131 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 ICA1LQ8NDH6 482 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 OR1J2Q8NGS2 313 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 OR1J1Q8NGS3 322 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 SLC38A5Q8WUX1 472 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 TMEM54Q969K7 222 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 UPRTQ96BW1 309 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 APOPT1Q96IL0 206 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 SH3GL3Q99963 347 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 TMEM38BQ9NVV0 291 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 DCAF16Q9NXF7 216 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 OR5V1Q9UGF6 321 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 ZNF232Q9UNY5 417 aa9.21□□□□□ -0.94
DDX41-216ENST00000513562 TRAV40A0A0B4J280 105 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 PLSCR5A0PG75 271 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 FARS2O95363 451 aaKnown RBP9.2□□□□□ -0.94
DDX41-216ENST00000513562 PTHP01270 115 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 BGLAPP02818 100 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 CRYBA1P05813 215 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 CD55P08174 381 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 SBK2P0C263 348 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 ETFAP13804 333 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 PAX2Q02962 417 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 HLXQ14774 488 aaPredicted RBP9.2□□□□□ -0.94
DDX41-216ENST00000513562 PDCD1Q15116 288 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 DEFB112Q30KQ8 113 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 SPRNQ5BIV9 151 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 FAM205BPQ63HN1 556 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 TMEM53Q6P2H8 277 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 FIP1L1Q6UN15 594 aaKnown RBP9.2□□□□□ -0.94
DDX41-216ENST00000513562 Q6ZPA2 131 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 ZNF621Q6ZSS3 439 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 PXKQ7Z7A4 578 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 IPCEF1Q8WWN9 437 aaPredicted RBP9.2□□□□□ -0.94
DDX41-216ENST00000513562 GEMIN6Q8WXD5 167 aaKnown RBP9.2□□□□□ -0.94
DDX41-216ENST00000513562 TEX37Q96LM6 180 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 ASPNQ9BXN1 380 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 PPCSQ9HAB8 311 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 CYSLTR2Q9NS75 346 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 MRPL39Q9NYK5 338 aaKnown RBP9.2□□□□□ -0.94
DDX41-216ENST00000513562 GLTPQ9NZD2 209 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 SLC17A7Q9P2U7 560 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 RPS6KB2Q9UBS0 482 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 CGGBP1Q9UFW8 167 aaPredicted RBP9.2□□□□□ -0.94
DDX41-216ENST00000513562 EGFL7Q9UHF1 273 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 IFT52Q9Y366 437 aa9.2□□□□□ -0.94
DDX41-216ENST00000513562 A0A0G2JPF8 293 aa9.19□□□□□ -0.94
DDX41-216ENST00000513562 A0A1B0GWA3 101 aa9.19□□□□□ -0.94
DDX41-216ENST00000513562 SMIM23A6NLE4 172 aa9.19□□□□□ -0.94
DDX41-216ENST00000513562 HNRNPCL2B2RXH8 293 aa9.19□□□□□ -0.94
DDX41-216ENST00000513562 HNRNPCL3B7ZW38 293 aa9.19□□□□□ -0.94
DDX41-216ENST00000513562 PLPP3O14495 311 aa9.19□□□□□ -0.94
DDX41-216ENST00000513562 PIN1P1O15428 100 aa9.19□□□□□ -0.94
DDX41-216ENST00000513562 HNRNPCL1O60812 293 aaKnown RBP9.19□□□□□ -0.94
DDX41-216ENST00000513562 CLPXO76031 633 aa9.19□□□□□ -0.94
DDX41-216ENST00000513562 KRT75O95678 551 aa9.19□□□□□ -0.94
DDX41-216ENST00000513562 HNRNPCL4P0DMR1 293 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms