RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 KCTD13Q8WZ19 329 aa3.32□□□□□ -1.88
USP53-205ENST00000509769 EMG1Q92979 244 aaKnown RBP3.32□□□□□ -1.88
USP53-205ENST00000509769 SLC25A46Q96AG3 418 aa3.32□□□□□ -1.88
USP53-205ENST00000509769 ACSF2Q96CM8 615 aaPredicted RBP3.32□□□□□ -1.88
USP53-205ENST00000509769 R3HDM4Q96D70 268 aa3.32□□□□□ -1.88
USP53-205ENST00000509769 STARD4Q96DR4 205 aa3.32□□□□□ -1.88
USP53-205ENST00000509769 HMCESQ96FZ2 354 aa3.32□□□□□ -1.88
USP53-205ENST00000509769 KCNA7Q96RP8 456 aa3.32□□□□□ -1.88
USP53-205ENST00000509769 TRIB1Q96RU8 372 aa3.32□□□□□ -1.88
USP53-205ENST00000509769 SMIM7Q9BQ49 75 aa3.32□□□□□ -1.88
USP53-205ENST00000509769 NAA11Q9BSU3 229 aaPredicted RBP3.32□□□□□ -1.88
USP53-205ENST00000509769 ZNF341Q9BYN7 854 aa3.32□□□□□ -1.88
USP53-205ENST00000509769 TPSD1Q9BZJ3 242 aa3.32□□□□□ -1.88
USP53-205ENST00000509769 SRMSQ9H3Y6 488 aa3.32□□□□□ -1.88
USP53-205ENST00000509769 Q9N2J8 555 aa3.32□□□□□ -1.88
USP53-205ENST00000509769 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.32□□□□□ -1.88
USP53-205ENST00000509769 ZNF701Q9NV72 531 aaPredicted RBP3.32□□□□□ -1.88
USP53-205ENST00000509769 SLC23A1Q9UHI7 598 aa3.32□□□□□ -1.88
USP53-205ENST00000509769 PSORS1C1Q9UIG5 152 aa3.32□□□□□ -1.88
USP53-205ENST00000509769 FBXL2Q9UKC9 423 aa3.32□□□□□ -1.88
USP53-205ENST00000509769 TSPAN16Q9UKR8 245 aa3.32□□□□□ -1.88
USP53-205ENST00000509769 TIMM8BQ9Y5J9 83 aaPredicted RBP3.32□□□□□ -1.88
USP53-205ENST00000509769 LTN1O94822 1766 aa3.32□□□□□ -1.88
USP53-205ENST00000509769 CCL15-CCL14A0A0B4J2E2 113 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.31□□□□□ -1.88
USP53-205ENST00000509769 B4DXG7 233 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 SYN3O14994 580 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 CLDN11O75508 207 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 GLCEO94923 617 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 GYPAP02724 150 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 SFTA3P0C7M3 94 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 GP1BBP13224 206 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 BMPR1AP36894 532 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 TGFBR1P36897 503 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 CD86P42081 329 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 AGFG1P52594 562 aaKnown RBP3.31□□□□□ -1.88
USP53-205ENST00000509769 EFNA3P52797 238 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 CLDN8P56748 225 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 MC1RQ01726 317 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 AKR1C1Q04828 323 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 PLP2Q04941 152 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 ZNF91Q05481 1191 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 MGAT2Q10469 447 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 ECH1Q13011 328 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 SLC14A2Q15849 920 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 RPE65Q16518 533 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 CPSF6Q16630 551 aaKnown RBP eCLIP3.31□□□□□ -1.88
USP53-205ENST00000509769 TMEM241Q24JQ0 296 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 SLC35G1Q2M3R5 365 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 SLC25A52Q3SY17 297 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 FAM209AQ5JX71 171 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 RAET1LQ5VY80 246 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 FRG2Q64ET8 278 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 PSRC1Q6PGN9 363 aaPredicted RBP3.31□□□□□ -1.88
USP53-205ENST00000509769 LYPD4Q6UWN0 246 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 Q6ZRG5 221 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 LRRC55Q6ZSA7 311 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 GPRIN1Q7Z2K8 1008 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 PLA2G15Q8NCC3 412 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 BEND2Q8NDZ0 799 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 OR5D18Q8NGL1 313 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 MRGPRDQ8TDS7 321 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 NANOS1Q8WY41 292 aaKnown RBP3.31□□□□□ -1.88
USP53-205ENST00000509769 SMPDL3BQ92485 455 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 NEUROG1Q92886 237 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 SEH1LQ96EE3 360 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 FRG2BQ96QU4 278 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 CITED1Q99966 193 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 DPH2Q9BQC3 489 aaPredicted RBP3.31□□□□□ -1.88
USP53-205ENST00000509769 MRPL45Q9BRJ2 306 aaKnown RBP3.31□□□□□ -1.88
USP53-205ENST00000509769 PCGF1Q9BSM1 259 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 SNRNP25Q9BV90 132 aaKnown RBP3.31□□□□□ -1.88
USP53-205ENST00000509769 RTL8AQ9BWD3 113 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 POLDIP3Q9BY77 421 aaKnown RBP3.31□□□□□ -1.88
USP53-205ENST00000509769 NARFLQ9H6Q4 476 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 GCM1Q9NP62 436 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 ASAH2Q9NR71 780 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 TDP1Q9NUW8 608 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 OR12D3Q9UGF7 316 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 AGO1Q9UL18 857 aaKnown RBP3.31□□□□□ -1.88
USP53-205ENST00000509769 SLC7A7Q9UM01 511 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 HHLA2Q9UM44 414 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 NFASCO94856 1347 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 LOC105369274A0A096LPK9 316 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 A0A0U1RQK1 487 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 ZNF320A2RRD8 509 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 DHRS7CA6NNS2 312 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 A8MT66 165 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 TCP10L2B9ZVM9 353 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 SOCS2O14508 198 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 ARPC3O15145 178 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 F11P03951 625 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 AGXTP21549 392 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 NME2P22392 152 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 OR1E1P30953 314 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 RPIAP49247 311 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 GNG10P50151 68 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 CLDN6P56747 220 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 MTPNP58546 118 aa3.31□□□□□ -1.88
USP53-205ENST00000509769 RPS16P62249 146 aaKnown RBP3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms