RNA–Protein interactions for RNA: ENST00000496375.1

CXCL12-208, Transcript of C-X-C motif chemokine ligand 12, human

TSL 5

Gene CXCL12, Length 803 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CXCL12-208	ENST00000496375	RCE1	Q9Y256	329 aa		12.51	□□□□□ -0.41
CXCL12-208	ENST00000496375	MED31	Q9Y3C7	131 aa		12.51	□□□□□ -0.41
CXCL12-208	ENST00000496375	FKBP7	Q9Y680	259 aa		12.51	□□□□□ -0.41
CXCL12-208	ENST00000496375	ANK2	Q01484	3957 aa		12.5	□□□□□ -0.41
CXCL12-208	ENST00000496375	AQP12B	A6NM10	295 aa		12.5	□□□□□ -0.41
CXCL12-208	ENST00000496375	LRRN3	E7EW58	273 aa		12.5	□□□□□ -0.41
CXCL12-208	ENST00000496375	MS4A18	H0YCH9	400 aa		12.5	□□□□□ -0.41
CXCL12-208	ENST00000496375	PLPP3	O14495	311 aa		12.5	□□□□□ -0.41
CXCL12-208	ENST00000496375	TRAF3IP2	O43734	574 aa	Predicted RBP	12.5	□□□□□ -0.41
CXCL12-208	ENST00000496375	CRYAA	P02489	173 aa		12.5	□□□□□ -0.41
CXCL12-208	ENST00000496375	FAM157C	P0CG43	387 aa		12.5	□□□□□ -0.41
CXCL12-208	ENST00000496375	IGHV4-31	P0DP07	118 aa		12.5	□□□□□ -0.41
CXCL12-208	ENST00000496375	ZNF16	P17020	682 aa	Predicted RBP	12.5	□□□□□ -0.41
CXCL12-208	ENST00000496375	HOXB6	P17509	224 aa	Known RBP	12.5	□□□□□ -0.41
CXCL12-208	ENST00000496375	USF1	P22415	310 aa	Predicted RBP	12.5	□□□□□ -0.41
CXCL12-208	ENST00000496375	MS4A18	Q3C1V0	323 aa		12.5	□□□□□ -0.41
CXCL12-208	ENST00000496375	CYB5R2	Q6BCY4	276 aa		12.5	□□□□□ -0.41
CXCL12-208	ENST00000496375	CYP2R1	Q6VVX0	501 aa		12.5	□□□□□ -0.41
CXCL12-208	ENST00000496375	AQP12A	Q8IXF9	295 aa		12.5	□□□□□ -0.41
CXCL12-208	ENST00000496375	SLC7A13	Q8TCU3	470 aa		12.5	□□□□□ -0.41
CXCL12-208	ENST00000496375	SORCS2	Q96PQ0	1159 aa		12.5	□□□□□ -0.41
CXCL12-208	ENST00000496375	KATNB1	Q9BVA0	655 aa		12.5	□□□□□ -0.41
CXCL12-208	ENST00000496375	C20orf141	Q9NUB4	165 aa		12.5	□□□□□ -0.41
CXCL12-208	ENST00000496375		A0A087WUU8	490 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375		A0A096LPE4	126 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	ARPC4-TTLL3	A0A0A6YYG9	625 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375		A0A1W2PPZ6	126 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	OR7A10	O76100	309 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	ZNF432	O94892	652 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	CH25H	O95992	272 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	HPR	P00739	348 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	FABP3	P05413	133 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	H1F0	P07305	194 aa	Known RBP	12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	CECR9	P0C854	216 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	PAX7	P23759	505 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	SERPINF1	P36955	418 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	YAP1	P46937	504 aa	Known RBP	12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	PDLIM4	P50479	330 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	CLDN17	P56750	224 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	LSM11	P83369	360 aa	Known RBP eCLIP	12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	ROR2	Q01974	943 aa	Known RBP	12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	NAAA	Q02083	359 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	PRKCD	Q05655	676 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	PUDP	Q08623	228 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	ANKDD1A	Q495B1	522 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	ANKRD16	Q6P6B7	361 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	VHLL	Q6RSH7	139 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	MBOAT2	Q6ZWT7	520 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	ASRGL1	Q7L266	308 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	PXK	Q7Z7A4	578 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	PHC2	Q8IXK0	858 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	PFN4	Q8NHR9	129 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	MAGEE2	Q8TD90	523 aa	Predicted RBP	12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	MCUR1	Q96AQ8	359 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	CCDC124	Q96CT7	223 aa	Known RBP	12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	SGTB	Q96EQ0	304 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	ZNF347	Q96SE7	839 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	VRK1	Q99986	396 aa	Predicted RBP	12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	PIMREG	Q9BSJ6	248 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	BEX2	Q9BXY8	128 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	LINC00470	Q9BZP3	86 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	TRIM15	Q9C019	465 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	NELFA	Q9H3P2	528 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	SEC61A2	Q9H9S3	476 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	NANS	Q9NR45	359 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	CA10	Q9NS85	328 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	TMEM160	Q9NX00	188 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	RHCG	Q9UBD6	479 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	CRNN	Q9UBG3	495 aa	Predicted RBP	12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	SLC7A8	Q9UHI5	535 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	POMP	Q9Y244	141 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	FAM32A	Q9Y421	112 aa	Known RBP	12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	NOX1	Q9Y5S8	564 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	MALRD1	Q5VYJ5	2156 aa		12.49	□□□□□ -0.41
CXCL12-208	ENST00000496375	NPIPB13	A6NJU9	1138 aa		12.48	□□□□□ -0.41
CXCL12-208	ENST00000496375	VWC2L	B2RUY7	222 aa		12.48	□□□□□ -0.41
CXCL12-208	ENST00000496375	NPIPB4	C9JG80	1138 aa		12.48	□□□□□ -0.41
CXCL12-208	ENST00000496375	hCG_2039718	K7EN88	272 aa		12.48	□□□□□ -0.41
CXCL12-208	ENST00000496375	KPNA4	O00629	521 aa	Predicted RBP	12.48	□□□□□ -0.41
CXCL12-208	ENST00000496375	ZNF43	P17038	809 aa		12.48	□□□□□ -0.41
CXCL12-208	ENST00000496375	LIMS1	P48059	325 aa		12.48	□□□□□ -0.41
CXCL12-208	ENST00000496375	HMGA2	P52926	109 aa		12.48	□□□□□ -0.41
CXCL12-208	ENST00000496375	SH3BGR	P55822	239 aa	Predicted RBP	12.48	□□□□□ -0.41
CXCL12-208	ENST00000496375	SMIM11A	P58511	58 aa		12.48	□□□□□ -0.41
CXCL12-208	ENST00000496375	PMS2P3	Q13401	168 aa		12.48	□□□□□ -0.41
CXCL12-208	ENST00000496375	GGTLC2	Q14390	218 aa		12.48	□□□□□ -0.41
CXCL12-208	ENST00000496375	ADIPOQ	Q15848	244 aa		12.48	□□□□□ -0.41
CXCL12-208	ENST00000496375	CARTPT	Q16568	116 aa		12.48	□□□□□ -0.41
CXCL12-208	ENST00000496375	TMPRSS11F	Q6ZWK6	438 aa		12.48	□□□□□ -0.41
CXCL12-208	ENST00000496375	ZDHHC21	Q8IVQ6	265 aa		12.48	□□□□□ -0.41
CXCL12-208	ENST00000496375	TMEM158	Q8WZ71	300 aa		12.48	□□□□□ -0.41
CXCL12-208	ENST00000496375	TAS2R5	Q9NYW4	299 aa		12.48	□□□□□ -0.41
CXCL12-208	ENST00000496375	HIF3A	Q9Y2N7	669 aa		12.48	□□□□□ -0.41
CXCL12-208	ENST00000496375		V9GYQ6	96 aa		12.48	□□□□□ -0.41
CXCL12-208	ENST00000496375	TCRBV3S1	A0A5B6	114 aa		12.47	□□□□□ -0.41
CXCL12-208	ENST00000496375		B9A039	149 aa		12.47	□□□□□ -0.41
CXCL12-208	ENST00000496375	RPL36A-HNRNPH2	H7BZ11	118 aa		12.47	□□□□□ -0.41
CXCL12-208	ENST00000496375	NDUFS8	O00217	210 aa		12.47	□□□□□ -0.41
CXCL12-208	ENST00000496375	PHF1	O43189	567 aa	Predicted RBP	12.47	□□□□□ -0.41
CXCL12-208	ENST00000496375	PIP5K1C	O60331	668 aa		12.47	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms