RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 AHCYL1O43865 530 aa12.83□□□□□ -0.36
BRCA1-223ENST00000494123 LYZL6O75951 148 aa12.83□□□□□ -0.36
BRCA1-223ENST00000494123 ATP6V1G2O95670 118 aa12.83□□□□□ -0.36
BRCA1-223ENST00000494123 RENP00797 406 aa12.83□□□□□ -0.36
BRCA1-223ENST00000494123 IFNGP01579 166 aa12.83□□□□□ -0.36
BRCA1-223ENST00000494123 QDPRP09417 244 aa12.83□□□□□ -0.36
BRCA1-223ENST00000494123 IGHV1-2P23083 117 aa12.83□□□□□ -0.36
BRCA1-223ENST00000494123 IL32P24001 234 aa12.83□□□□□ -0.36
BRCA1-223ENST00000494123 MPGP29372 298 aa12.83□□□□□ -0.36
BRCA1-223ENST00000494123 GRK5P34947 590 aa12.83□□□□□ -0.36
BRCA1-223ENST00000494123 GIPRP48546 466 aa12.83□□□□□ -0.36
BRCA1-223ENST00000494123 TGFBR3Q03167 851 aa12.83□□□□□ -0.36
BRCA1-223ENST00000494123 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.83□□□□□ -0.36
BRCA1-223ENST00000494123 PTGES3Q15185 160 aaKnown RBP12.83□□□□□ -0.36
BRCA1-223ENST00000494123 CEACAM16Q2WEN9 425 aa12.83□□□□□ -0.36
BRCA1-223ENST00000494123 THEM4Q5T1C6 240 aa12.83□□□□□ -0.36
BRCA1-223ENST00000494123 LEG1Q6P5S2 330 aa12.83□□□□□ -0.36
BRCA1-223ENST00000494123 GALNT4Q8N4A0 578 aa12.83□□□□□ -0.36
BRCA1-223ENST00000494123 SDR9C7Q8NEX9 313 aa12.83□□□□□ -0.36
BRCA1-223ENST00000494123 OR52E2Q8NGJ4 325 aa12.83□□□□□ -0.36
BRCA1-223ENST00000494123 HDHD5Q9BXW7 423 aa12.83□□□□□ -0.36
BRCA1-223ENST00000494123 KLHL21Q9UJP4 597 aa12.83□□□□□ -0.36
BRCA1-223ENST00000494123 ALPK2Q86TB3 2170 aa12.83□□□□□ -0.36
BRCA1-223ENST00000494123 SLC22A23A1A5C7 686 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 RIIAD1A6NNX1 92 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 C16orf97H3BN30 126 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 RPL36A-HNRNPH2H7BZ11 118 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 CASQ2O14958 399 aaPredicted RBP12.82□□□□□ -0.36
BRCA1-223ENST00000494123 HMGN1P05114 100 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 ITGA5P08648 1049 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 COX5AP20674 150 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 UGT2B10P36537 528 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 CDKN2AP42771 156 aaKnown RBP12.82□□□□□ -0.36
BRCA1-223ENST00000494123 ZNF84P51523 738 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 CDK5Q00535 292 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 FMODQ06828 376 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 TFF3Q07654 80 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 NPRL3Q12980 569 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 HIST3H3Q16695 136 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 ZIK1Q3SY52 487 aaPredicted RBP12.82□□□□□ -0.36
BRCA1-223ENST00000494123 SFRP5Q5T4F7 317 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 TMEM236Q5W0B7 351 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 STAC2Q6ZMT1 411 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 PTCHD4Q6ZW05 846 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 LINGO2Q7L985 606 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 BHLHA15Q7RTS1 189 aaPredicted RBP12.82□□□□□ -0.36
BRCA1-223ENST00000494123 PACRGLQ8N7B6 248 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 MCHR2Q969V1 340 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 PLEKHA8Q96JA3 519 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 NMNAT3Q96T66 252 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 GABARAPL3Q9BY60 117 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 PRRG3Q9BZD7 231 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 SYT4Q9H2B2 425 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 VCXQ9H320 206 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 SLC25A19Q9HC21 320 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 GPR52Q9Y2T5 361 aa12.82□□□□□ -0.36
BRCA1-223ENST00000494123 KLF2Q9Y5W3 355 aaPredicted RBP12.82□□□□□ -0.36
BRCA1-223ENST00000494123 HCFC1P51610 2035 aa12.81□□□□□ -0.36
BRCA1-223ENST00000494123 A1L4Q6 167 aa12.81□□□□□ -0.36
BRCA1-223ENST00000494123 PRSS44E7EML9 344 aa12.81□□□□□ -0.36
BRCA1-223ENST00000494123 DHHO43323 396 aa12.81□□□□□ -0.36
BRCA1-223ENST00000494123 RAD51DO75771 328 aa12.81□□□□□ -0.36
BRCA1-223ENST00000494123 SLC2A10O95528 541 aa12.81□□□□□ -0.36
BRCA1-223ENST00000494123 ZNF3P17036 446 aa12.81□□□□□ -0.36
BRCA1-223ENST00000494123 PSMB1P20618 241 aaKnown RBP12.81□□□□□ -0.36
BRCA1-223ENST00000494123 GRNP28799 593 aaKnown RBP12.81□□□□□ -0.36
BRCA1-223ENST00000494123 FOXG1P55316 489 aaPredicted RBP12.81□□□□□ -0.36
BRCA1-223ENST00000494123 SH3BGRP55822 239 aaPredicted RBP12.81□□□□□ -0.36
BRCA1-223ENST00000494123 TSC22D1Q15714 1073 aa12.81□□□□□ -0.36
BRCA1-223ENST00000494123 OGFRL1Q5TC84 451 aaPredicted RBP12.81□□□□□ -0.36
BRCA1-223ENST00000494123 ACSM5Q6NUN0 579 aa12.81□□□□□ -0.36
BRCA1-223ENST00000494123 LRFN4Q6PJG9 635 aa12.81□□□□□ -0.36
BRCA1-223ENST00000494123 ZNF433Q8N7K0 673 aaPredicted RBP12.81□□□□□ -0.36
BRCA1-223ENST00000494123 STEAP2Q8NFT2 490 aa12.81□□□□□ -0.36
BRCA1-223ENST00000494123 NSMAFQ92636 917 aa12.81□□□□□ -0.36
BRCA1-223ENST00000494123 SLC38A2Q96QD8 506 aa12.81□□□□□ -0.36
BRCA1-223ENST00000494123 SNX18Q96RF0 628 aa12.81□□□□□ -0.36
BRCA1-223ENST00000494123 RERGLQ9H628 205 aa12.81□□□□□ -0.36
BRCA1-223ENST00000494123 VSX1Q9NZR4 365 aaPredicted RBP12.81□□□□□ -0.36
BRCA1-223ENST00000494123 FASNP49327 2511 aaKnown RBP12.81□□□□□ -0.36
BRCA1-223ENST00000494123 ZNF99A8MXY4 864 aaPredicted RBP12.8□□□□□ -0.36
BRCA1-223ENST00000494123 HOXC12P31275 282 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 PCYT1AP49585 367 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 ARF1P84077 181 aaKnown RBP12.8□□□□□ -0.36
BRCA1-223ENST00000494123 SORDQ00796 357 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 STK11Q15831 433 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 OR7E24Q6IFN5 339 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 DNM1P34Q6PK57 102 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 ZNF837Q96EG3 531 aaPredicted RBP12.8□□□□□ -0.36
BRCA1-223ENST00000494123 ACTR6Q9GZN1 396 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 TOR3AQ9H497 397 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 RPRD1BQ9NQG5 326 aaKnown RBP12.8□□□□□ -0.36
BRCA1-223ENST00000494123 CMC2Q9NRP2 79 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 SMPD3Q9NY59 655 aaPredicted RBP12.8□□□□□ -0.36
BRCA1-223ENST00000494123 TVP23BQ9NYZ1 205 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 ZAR1LA6NP61 321 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 SLC16A7O60669 478 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 SNAP29O95721 258 aa12.8□□□□□ -0.36
BRCA1-223ENST00000494123 PAICSP22234 425 aaKnown RBP12.8□□□□□ -0.36
BRCA1-223ENST00000494123 EPHA2P29317 976 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms