RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 PRELID2Q8N945 189 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 KIR2DL5BQ8NHK3 375 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 TCP10LQ8TDR4 215 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 AGAP11Q8TF27 550 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 FGGYQ96C11 551 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 HINT2Q9BX68 163 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 ZYG11BQ9C0D3 744 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 SELENOIQ9C0D9 397 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 DUX4Q9UBX2 424 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 GNPTGQ9UJJ9 305 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 ING4Q9UNL4 249 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 CDH10Q9Y6N8 788 aa3.61□□□□□ -1.83
VPS13A-212ENST00000493341 IGHV1OR15-1A0A075B7D0 117 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 GLYATL1P3A0A0U1RQE8 302 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 ERICH2A1L162 156 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 NDUFAF8A1L188 74 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 OR6C74A6NCV1 312 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 PRSS44E7EML9 344 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 H7C423 109 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 TBL1XO60907 577 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 FARS2O95363 451 aaKnown RBP3.6□□□□□ -1.83
VPS13A-212ENST00000493341 TBX6O95947 436 aaPredicted RBP3.6□□□□□ -1.83
VPS13A-212ENST00000493341 HOXB8P17481 243 aaPredicted RBP3.6□□□□□ -1.83
VPS13A-212ENST00000493341 RPL34P49207 117 aaKnown RBP3.6□□□□□ -1.83
VPS13A-212ENST00000493341 SLC26A2P50443 739 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 ADARB1P78563 741 aaKnown RBP3.6□□□□□ -1.83
VPS13A-212ENST00000493341 CXCL6P80162 114 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 TGFBR3Q03167 851 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 GABRA6Q16445 453 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 KRTAP24-1Q3LI83 254 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 WDR74Q6RFH5 385 aaPredicted RBP3.6□□□□□ -1.83
VPS13A-212ENST00000493341 TFAP2EQ6VUC0 442 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 APRG1Q8IVJ8 170 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 ZNF547Q8IVP9 402 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 ZBED8Q8IZ13 594 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 ARHGAP18Q8N392 663 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 NDRG1Q92597 394 aaKnown RBP3.6□□□□□ -1.83
VPS13A-212ENST00000493341 CIDECQ96AQ7 238 aaPredicted RBP3.6□□□□□ -1.83
VPS13A-212ENST00000493341 TMEM175Q9BSA9 504 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 PRSS16Q9NQE7 514 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 LGALS13Q9UHV8 139 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 KIF25Q9UIL4 384 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 GOLT1BQ9Y3E0 138 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 PHF3Q92576 2039 aaKnown RBP3.6□□□□□ -1.83
VPS13A-212ENST00000493341 IGHV3OR16-13A0A075B7E8 117 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 USP27XA6NNY8 438 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 SLC9A3R1O14745 358 aaPredicted RBP3.6□□□□□ -1.83
VPS13A-212ENST00000493341 CETN3O15182 167 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 CLDN11O75508 207 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 ZNF250P15622 560 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 CCNOP22674 350 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 NBL1P41271 181 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 CRIP2P52943 208 aaPredicted RBP3.6□□□□□ -1.83
VPS13A-212ENST00000493341 STXBP1P61764 594 aaKnown RBP3.6□□□□□ -1.83
VPS13A-212ENST00000493341 ACVR1Q04771 509 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 TRAM2Q15035 370 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 TSC22D1Q15714 1073 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 PSMD5Q16401 504 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 PAN3Q58A45 887 aaKnown RBP3.6□□□□□ -1.83
VPS13A-212ENST00000493341 OR2B11Q5JQS5 317 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 OLFML2AQ68BL7 652 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 ZNF343Q6P1L6 599 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 GPRIN3Q6ZVF9 776 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 C6orf223Q8N319 242 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 ISOC2Q96AB3 205 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 DUS3LQ96G46 650 aaKnown RBP3.6□□□□□ -1.83
VPS13A-212ENST00000493341 PSMB7Q99436 277 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 HIST1H4GQ99525 98 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 KCTD14Q9BQ13 255 aaPredicted RBP3.6□□□□□ -1.83
VPS13A-212ENST00000493341 ECSITQ9BQ95 431 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 NAA50Q9GZZ1 169 aaKnown RBP3.6□□□□□ -1.83
VPS13A-212ENST00000493341 CHMP5Q9NZZ3 219 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 UGT2A1Q9Y4X1 527 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 SAR1BQ9Y6B6 198 aa3.6□□□□□ -1.83
VPS13A-212ENST00000493341 CUL7Q14999 1698 aa3.59□□□□□ -1.83
VPS13A-212ENST00000493341 NUP160Q12769 1436 aa3.59□□□□□ -1.83
VPS13A-212ENST00000493341 CENPJQ9HC77 1338 aaPredicted RBP3.59□□□□□ -1.83
VPS13A-212ENST00000493341 CTRB1P17538 263 aa3.59□□□□□ -1.83
VPS13A-212ENST00000493341 LCN1P31025 176 aa3.59□□□□□ -1.83
VPS13A-212ENST00000493341 KIR2DS4P43632 304 aa3.59□□□□□ -1.83
VPS13A-212ENST00000493341 NPBWR2P48146 333 aa3.59□□□□□ -1.83
VPS13A-212ENST00000493341 NCF4Q15080 339 aa3.59□□□□□ -1.83
VPS13A-212ENST00000493341 TRMT5Q32P41 509 aaKnown RBP3.59□□□□□ -1.83
VPS13A-212ENST00000493341 CTRB2Q6GPI1 263 aa3.59□□□□□ -1.83
VPS13A-212ENST00000493341 UNQ9370/PRO34162Q6UXP9 181 aa3.59□□□□□ -1.83
VPS13A-212ENST00000493341 ZNF589Q86UQ0 364 aaPredicted RBP3.59□□□□□ -1.83
VPS13A-212ENST00000493341 OR5K2Q8NHB8 316 aa3.59□□□□□ -1.83
VPS13A-212ENST00000493341 NUBPLQ8TB37 319 aa3.59□□□□□ -1.83
VPS13A-212ENST00000493341 TSG101Q99816 390 aa3.59□□□□□ -1.83
VPS13A-212ENST00000493341 KCNS3Q9BQ31 491 aa3.59□□□□□ -1.83
VPS13A-212ENST00000493341 RANBP3Q9H6Z4 567 aaPredicted RBP3.59□□□□□ -1.83
VPS13A-212ENST00000493341 ABCD2Q9UBJ2 740 aa3.59□□□□□ -1.83
VPS13A-212ENST00000493341 YARS2Q9Y2Z4 477 aaKnown RBP3.59□□□□□ -1.83
VPS13A-212ENST00000493341 FLVCR1Q9Y5Y0 555 aa3.59□□□□□ -1.83
VPS13A-212ENST00000493341 GMEB1Q9Y692 573 aa3.59□□□□□ -1.83
VPS13A-212ENST00000493341 FANCIQ9NVI1 1328 aa3.59□□□□□ -1.84
VPS13A-212ENST00000493341 GRIN2AQ12879 1464 aa3.59□□□□□ -1.84
VPS13A-212ENST00000493341 ARAP1Q96P48 1450 aa3.59□□□□□ -1.84
VPS13A-212ENST00000493341 MSH6P52701 1360 aa3.58□□□□□ -1.84
VPS13A-212ENST00000493341 CEP170Q5SW79 1584 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 105.4 ms