RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 ALG10Q5BKT4 473 aa15.72■□□□□ 0.11
COL9A3-214ENST00000490398 SAMD4BQ5PRF9 694 aaKnown RBP15.72■□□□□ 0.11
COL9A3-214ENST00000490398 ZNF544Q6NX49 715 aa15.72■□□□□ 0.11
COL9A3-214ENST00000490398 PODNL1Q6PEZ8 512 aa15.72■□□□□ 0.11
COL9A3-214ENST00000490398 VHLLQ6RSH7 139 aa15.72■□□□□ 0.11
COL9A3-214ENST00000490398 ZNF730Q6ZMV8 503 aa15.72■□□□□ 0.11
COL9A3-214ENST00000490398 MBOAT2Q6ZWT7 520 aa15.72■□□□□ 0.11
COL9A3-214ENST00000490398 FBXL14Q8N1E6 418 aa15.72■□□□□ 0.11
COL9A3-214ENST00000490398 FAM169BQ8N8A8 192 aa15.72■□□□□ 0.11
COL9A3-214ENST00000490398 NOXO1Q8NFA2 376 aa15.72■□□□□ 0.11
COL9A3-214ENST00000490398 NMD3Q96D46 503 aaKnown RBP15.72■□□□□ 0.11
COL9A3-214ENST00000490398 SH3GL3Q99963 347 aa15.72■□□□□ 0.11
COL9A3-214ENST00000490398 FAIMQ9NVQ4 179 aa15.72■□□□□ 0.11
COL9A3-214ENST00000490398 TMEM38BQ9NVV0 291 aa15.72■□□□□ 0.11
COL9A3-214ENST00000490398 IGHV2OR16-5A0A0B4J2B6 119 aa15.71■□□□□ 0.11
COL9A3-214ENST00000490398 EFCAB9A8MZ26 197 aa15.71■□□□□ 0.11
COL9A3-214ENST00000490398 MCIDASD6RGH6 385 aa15.71■□□□□ 0.11
COL9A3-214ENST00000490398 SLC2A10O95528 541 aa15.71■□□□□ 0.11
COL9A3-214ENST00000490398 IGHG1P01857 330 aa15.71■□□□□ 0.11
COL9A3-214ENST00000490398 CRYAAP02489 173 aa15.71■□□□□ 0.11
COL9A3-214ENST00000490398 SAGP10523 405 aaPredicted RBP15.71■□□□□ 0.11
COL9A3-214ENST00000490398 APOBEC3AP31941 199 aaPredicted RBP15.71■□□□□ 0.11
COL9A3-214ENST00000490398 IFNA8P32881 189 aa15.71■□□□□ 0.11
COL9A3-214ENST00000490398 ARR3P36575 388 aa15.71■□□□□ 0.11
COL9A3-214ENST00000490398 GIPRP48546 466 aa15.71■□□□□ 0.11
COL9A3-214ENST00000490398 CLRN1P58418 232 aa15.71■□□□□ 0.11
COL9A3-214ENST00000490398 TNK1Q13470 666 aa15.71■□□□□ 0.11
COL9A3-214ENST00000490398 SWI5Q1ZZU3 235 aa15.71■□□□□ 0.11
COL9A3-214ENST00000490398 CLEC12BQ2HXU8 276 aa15.71■□□□□ 0.11
COL9A3-214ENST00000490398 C3orf36Q3SXR2 165 aa15.71■□□□□ 0.11
COL9A3-214ENST00000490398 RINLQ6ZS11 566 aa15.71■□□□□ 0.11
COL9A3-214ENST00000490398 ZNF584Q8IVC4 421 aa15.71■□□□□ 0.11
COL9A3-214ENST00000490398 SLC22A24Q8N4F4 322 aa15.71■□□□□ 0.11
COL9A3-214ENST00000490398 FBXO17Q96EF6 278 aa15.71■□□□□ 0.11
COL9A3-214ENST00000490398 FAM46AQ96IP4 442 aaKnown RBP15.71■□□□□ 0.11
COL9A3-214ENST00000490398 TSPAN32Q96QS1 320 aa15.71■□□□□ 0.11
COL9A3-214ENST00000490398 TXNIPQ9H3M7 391 aa15.71■□□□□ 0.11
COL9A3-214ENST00000490398 ZNF346Q9UL40 294 aaKnown RBP15.71■□□□□ 0.11
COL9A3-214ENST00000490398 SAMD4AQ9UPU9 718 aaKnown RBP15.71■□□□□ 0.11
COL9A3-214ENST00000490398 B2RBV5 119 aa15.7■□□□□ 0.1
COL9A3-214ENST00000490398 H1F0P07305 194 aaKnown RBP15.7■□□□□ 0.1
COL9A3-214ENST00000490398 ZNF14P17017 642 aaPredicted RBP15.7■□□□□ 0.1
COL9A3-214ENST00000490398 THBS4P35443 961 aa15.7■□□□□ 0.1
COL9A3-214ENST00000490398 PTDSS1P48651 473 aaKnown RBP15.7■□□□□ 0.1
COL9A3-214ENST00000490398 CTXN1P60606 82 aa15.7■□□□□ 0.1
COL9A3-214ENST00000490398 RAB1AP62820 205 aa15.7■□□□□ 0.1
COL9A3-214ENST00000490398 MXRA7P84157 204 aa15.7■□□□□ 0.1
COL9A3-214ENST00000490398 ADIPOQQ15848 244 aa15.7■□□□□ 0.1
COL9A3-214ENST00000490398 MSMPQ1L6U9 139 aa15.7■□□□□ 0.1
COL9A3-214ENST00000490398 GSG1Q2KHT4 349 aa15.7■□□□□ 0.1
COL9A3-214ENST00000490398 GKAP1Q5VSY0 366 aaPredicted RBP15.7■□□□□ 0.1
COL9A3-214ENST00000490398 C16orf89Q6UX73 402 aa15.7■□□□□ 0.1
COL9A3-214ENST00000490398 DNM1P46Q6ZS02 220 aa15.7■□□□□ 0.1
COL9A3-214ENST00000490398 RNF113BQ8IZP6 322 aaKnown RBP15.7■□□□□ 0.1
COL9A3-214ENST00000490398 CCDC197Q8NCU1 140 aa15.7■□□□□ 0.1
COL9A3-214ENST00000490398 MAPK1IP1LQ8NDC0 245 aa15.7■□□□□ 0.1
COL9A3-214ENST00000490398 OR4K5Q8NGD3 323 aa15.7■□□□□ 0.1
COL9A3-214ENST00000490398 OR52J3Q8NH60 311 aa15.7■□□□□ 0.1
COL9A3-214ENST00000490398 TRMT61AQ96FX7 289 aaKnown RBP15.7■□□□□ 0.1
COL9A3-214ENST00000490398 PYURFQ96I23 114 aa15.7■□□□□ 0.1
COL9A3-214ENST00000490398 NSL1Q96IY1 281 aa15.7■□□□□ 0.1
COL9A3-214ENST00000490398 GPA33Q99795 319 aa15.7■□□□□ 0.1
COL9A3-214ENST00000490398 FUZQ9BT04 418 aa15.7■□□□□ 0.1
COL9A3-214ENST00000490398 CA10Q9NS85 328 aa15.7■□□□□ 0.1
COL9A3-214ENST00000490398 MAGEL2Q9UJ55 1249 aa15.7■□□□□ 0.1
COL9A3-214ENST00000490398 UGT2A1Q9Y4X1 527 aa15.7■□□□□ 0.1
COL9A3-214ENST00000490398 SSX4O60224 188 aa15.69■□□□□ 0.1
COL9A3-214ENST00000490398 LY6HO94772 140 aa15.69■□□□□ 0.1
COL9A3-214ENST00000490398 RHCEP18577 417 aa15.69■□□□□ 0.1
COL9A3-214ENST00000490398 ATP6V1B2P21281 511 aa15.69■□□□□ 0.1
COL9A3-214ENST00000490398 CDAP32320 146 aa15.69■□□□□ 0.1
COL9A3-214ENST00000490398 DAP3P51398 398 aaKnown RBP15.69■□□□□ 0.1
COL9A3-214ENST00000490398 ZNF133P52736 654 aaPredicted RBP15.69■□□□□ 0.1
COL9A3-214ENST00000490398 RAB39AQ14964 217 aa15.69■□□□□ 0.1
COL9A3-214ENST00000490398 FGD3Q5JSP0 725 aa15.69■□□□□ 0.1
COL9A3-214ENST00000490398 TMPRSS11FQ6ZWK6 438 aa15.69■□□□□ 0.1
COL9A3-214ENST00000490398 PIWIL3Q7Z3Z3 882 aaKnown RBP15.69■□□□□ 0.1
COL9A3-214ENST00000490398 OAFQ86UD1 273 aa15.69■□□□□ 0.1
COL9A3-214ENST00000490398 CYP4Z1Q86W10 505 aa15.69■□□□□ 0.1
COL9A3-214ENST00000490398 ZNF519Q8TB69 540 aa15.69■□□□□ 0.1
COL9A3-214ENST00000490398 DHRS1Q96LJ7 313 aa15.69■□□□□ 0.1
COL9A3-214ENST00000490398 NSMCE2Q96MF7 247 aa15.69■□□□□ 0.1
COL9A3-214ENST00000490398 KCNK17Q96T54 332 aa15.69■□□□□ 0.1
COL9A3-214ENST00000490398 KCNS3Q9BQ31 491 aa15.69■□□□□ 0.1
COL9A3-214ENST00000490398 HEATR1Q9H583 2144 aaKnown RBP15.69■□□□□ 0.1
COL9A3-214ENST00000490398 ADAM18Q9Y3Q7 739 aa15.69■□□□□ 0.1
COL9A3-214ENST00000490398 A0A1W2PRQ8 180 aa15.68■□□□□ 0.1
COL9A3-214ENST00000490398 NPIPB13A6NJU9 1138 aa15.68■□□□□ 0.1
COL9A3-214ENST00000490398 NPIPB4C9JG80 1138 aa15.68■□□□□ 0.1
COL9A3-214ENST00000490398 H7C1C5 153 aa15.68■□□□□ 0.1
COL9A3-214ENST00000490398 GMNNO75496 209 aa15.68■□□□□ 0.1
COL9A3-214ENST00000490398 LY6G6DO95868 133 aa15.68■□□□□ 0.1
COL9A3-214ENST00000490398 IGHMP01871 453 aa15.68■□□□□ 0.1
COL9A3-214ENST00000490398 OR4A8P0C604 315 aa15.68■□□□□ 0.1
COL9A3-214ENST00000490398 OMPP47874 163 aa15.68■□□□□ 0.1
COL9A3-214ENST00000490398 LIMS1P48059 325 aa15.68■□□□□ 0.1
COL9A3-214ENST00000490398 RPL27P61353 136 aaKnown RBP15.68■□□□□ 0.1
COL9A3-214ENST00000490398 LCN6P62502 163 aa15.68■□□□□ 0.1
COL9A3-214ENST00000490398 ERVK-25P63136 954 aa15.68■□□□□ 0.1
COL9A3-214ENST00000490398 DGCR6Q14129 220 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms