RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 NRIP3Q9NQ35 241 aa7.29□□□□□ -1.24
SF3A1-208ENST00000485618 NPDC1Q9NQX5 325 aaPredicted RBP7.29□□□□□ -1.24
SF3A1-208ENST00000485618 PAPOLBQ9NRJ5 636 aaKnown RBP7.29□□□□□ -1.24
SF3A1-208ENST00000485618 TBC1D23Q9NUY8 699 aa7.29□□□□□ -1.24
SF3A1-208ENST00000485618 MED29Q9NX70 200 aa7.29□□□□□ -1.24
SF3A1-208ENST00000485618 IL20Q9NYY1 176 aa7.29□□□□□ -1.24
SF3A1-208ENST00000485618 PRSS50Q9UI38 385 aa7.29□□□□□ -1.24
SF3A1-208ENST00000485618 ZNF346Q9UL40 294 aaKnown RBP7.29□□□□□ -1.24
SF3A1-208ENST00000485618 AMDHD2Q9Y303 409 aa7.29□□□□□ -1.24
SF3A1-208ENST00000485618 IER3IP1Q9Y5U9 82 aa7.29□□□□□ -1.24
SF3A1-208ENST00000485618 KIAA1549Q9HCM3 1950 aa7.29□□□□□ -1.24
SF3A1-208ENST00000485618 PKDREJQ9NTG1 2253 aa7.29□□□□□ -1.24
SF3A1-208ENST00000485618 ERICH4A6NGS2 130 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 RIIAD1A6NNX1 92 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 VSTM5A8MXK1 200 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 UPK3AO75631 287 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 TRMUO75648 421 aaKnown RBP7.28□□□□□ -1.24
SF3A1-208ENST00000485618 LYZL6O75951 148 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 TXNDC12O95881 172 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 PTHP01270 115 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 QDPRP09417 244 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 OR8G3PP0DMU2 310 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 OSMP13725 252 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 IGFBP2P18065 325 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 PAICSP22234 425 aaKnown RBP7.28□□□□□ -1.24
SF3A1-208ENST00000485618 IGHV1-2P23083 117 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 BLVRAP53004 296 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 PCBD1P61457 104 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 ESRRGP62508 458 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 MYBPC1Q00872 1141 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 DAZAP2Q15038 168 aaPredicted RBP7.28□□□□□ -1.24
SF3A1-208ENST00000485618 PPA1Q15181 289 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 CDSNQ15517 529 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 ARMC4Q5T2S8 1044 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 ZNF770Q6IQ21 691 aaPredicted RBP7.28□□□□□ -1.24
SF3A1-208ENST00000485618 SLC27A4Q6P1M0 643 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 ZNF813Q6ZN06 617 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 ZNF620Q6ZNG0 422 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 ZNF771Q7L3S4 317 aaPredicted RBP7.28□□□□□ -1.24
SF3A1-208ENST00000485618 MEX3DQ86XN8 651 aaKnown RBP7.28□□□□□ -1.24
SF3A1-208ENST00000485618 SYT14Q8NB59 555 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 IL17RDQ8NFM7 739 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 OR9Q2Q8NGE9 314 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 TMEM54Q969K7 222 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 S100PBPQ96BU1 408 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 BOD1Q96IK1 185 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 PLEKHA8Q96JA3 519 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 SAMD8Q96LT4 415 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 WFIKKN1Q96NZ8 548 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 ERMAPQ96PL5 475 aaPredicted RBP7.28□□□□□ -1.24
SF3A1-208ENST00000485618 SLC38A2Q96QD8 506 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 KCNS3Q9BQ31 491 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 WACQ9BTA9 647 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 MRPL13Q9BYD1 178 aaKnown RBP7.28□□□□□ -1.24
SF3A1-208ENST00000485618 OR52D1Q9H346 318 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 C8orf4Q9NR00 106 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 KLHL21Q9UJP4 597 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 OTOGQ6ZRI0 2925 aa7.28□□□□□ -1.24
SF3A1-208ENST00000485618 ALPK2Q86TB3 2170 aa7.27□□□□□ -1.24
SF3A1-208ENST00000485618 PRSS37A4D1T9 235 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 C19orf84I3L1E1 186 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 PDLIM1O00151 329 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 DHHO43323 396 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 KHDRBS3O75525 346 aaKnown RBP7.27□□□□□ -1.25
SF3A1-208ENST00000485618 RAD51DO75771 328 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 UBL3O95164 117 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 PGA4P0DJD7 388 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 PGA3P0DJD8 388 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 ZNF3P17036 446 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 POU1F1P28069 291 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 NTF4P34130 210 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 ARR3P36575 388 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 CAPZA2P47755 286 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 CENPAP49450 140 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 RAD23AP54725 363 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 LSM11P83369 360 aaKnown RBP eCLIP7.27□□□□□ -1.25
SF3A1-208ENST00000485618 ARF1P84077 181 aaKnown RBP7.27□□□□□ -1.25
SF3A1-208ENST00000485618 PPP1R8Q12972 351 aaKnown RBP7.27□□□□□ -1.25
SF3A1-208ENST00000485618 KRR1Q13601 381 aaKnown RBP7.27□□□□□ -1.25
SF3A1-208ENST00000485618 MELKQ14680 651 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 GABRA6Q16445 453 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 HIST3H3Q16695 136 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 CEACAM16Q2WEN9 425 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 SLC36A2Q495M3 483 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 BEX5Q5H9J7 111 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 ANKRD34AQ69YU3 496 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 TMEM53Q6P2H8 277 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 TMEM108Q6UXF1 575 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 UNQ6126/PRO20091Q6UXV3 157 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 NHLRC1Q6VVB1 395 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.27□□□□□ -1.25
SF3A1-208ENST00000485618 AMIGO2Q86SJ2 522 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 CDH24Q86UP0 819 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 IGFN1Q86VF2 1251 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 ZNF295-AS1Q8N0V1 137 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 PARP8Q8N3A8 854 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 FAM169BQ8N8A8 192 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 ICA1LQ8NDH6 482 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 NOXO1Q8NFA2 376 aa7.27□□□□□ -1.25
SF3A1-208ENST00000485618 OR1K1Q8NGR3 316 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms