RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 TNFRSF11BO00300 401 aa13.87□□□□□ -0.19
UPF3A-208ENST00000484246 HS3ST1O14792 307 aa13.87□□□□□ -0.19
UPF3A-208ENST00000484246 OR10H3O60404 316 aa13.87□□□□□ -0.19
UPF3A-208ENST00000484246 TMCC2O75069 709 aa13.87□□□□□ -0.19
UPF3A-208ENST00000484246 ATE1O95260 518 aa13.87□□□□□ -0.19
UPF3A-208ENST00000484246 TXNDC12O95881 172 aa13.87□□□□□ -0.19
UPF3A-208ENST00000484246 IGKV3-15P01624 115 aa13.87□□□□□ -0.19
UPF3A-208ENST00000484246 CLRN1P58418 232 aa13.87□□□□□ -0.19
UPF3A-208ENST00000484246 TSPAN31Q12999 210 aa13.87□□□□□ -0.19
UPF3A-208ENST00000484246 GPR139Q6DWJ6 353 aa13.87□□□□□ -0.19
UPF3A-208ENST00000484246 ASRGL1Q7L266 308 aa13.87□□□□□ -0.19
UPF3A-208ENST00000484246 ZNF611Q8N823 705 aa13.87□□□□□ -0.19
UPF3A-208ENST00000484246 NRGNQ92686 78 aa13.87□□□□□ -0.19
UPF3A-208ENST00000484246 MCHR2Q969V1 340 aa13.87□□□□□ -0.19
UPF3A-208ENST00000484246 DENND2DQ9H6A0 471 aaPredicted RBP13.87□□□□□ -0.19
UPF3A-208ENST00000484246 REEP1Q9H902 201 aa13.87□□□□□ -0.19
UPF3A-208ENST00000484246 TMEM38BQ9NVV0 291 aa13.87□□□□□ -0.19
UPF3A-208ENST00000484246 VNN3Q9NY84 501 aa13.87□□□□□ -0.19
UPF3A-208ENST00000484246 SAMHD1Q9Y3Z3 626 aaKnown RBP13.87□□□□□ -0.19
UPF3A-208ENST00000484246 CREBBPQ92793 2442 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 CACNA1DQ01668 2161 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 A0A096LPE4 126 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 A0A1W2PPZ6 126 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 A0A1W2PR80 420 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 SHISA9B4DS77 424 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 PLAUP00749 431 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 QDPRP09417 244 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 CBR1P16152 277 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 SDHAP31040 664 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 ZNF83P51522 516 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 TOP3AQ13472 1001 aaPredicted RBP13.86□□□□□ -0.19
UPF3A-208ENST00000484246 ZNF672Q499Z4 452 aaPredicted RBP13.86□□□□□ -0.19
UPF3A-208ENST00000484246 SMARCD3Q6STE5 483 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 THSD4Q6ZMP0 1018 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 ZNF813Q6ZN06 617 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 DPY19L2P2Q6ZN68 376 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 ZNF620Q6ZNG0 422 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 DPPA2Q7Z7J5 298 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 IGFN1Q86VF2 1251 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 SPATA24Q86W54 205 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 LILRB1Q8NHL6 650 aaPredicted RBP13.86□□□□□ -0.19
UPF3A-208ENST00000484246 GNPDA2Q8TDQ7 276 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 NANOS1Q8WY41 292 aaKnown RBP13.86□□□□□ -0.19
UPF3A-208ENST00000484246 LIME1Q9H400 295 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 YY1AP1Q9H869 796 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 CCM2LQ9NUG4 571 aaPredicted RBP13.86□□□□□ -0.19
UPF3A-208ENST00000484246 B3GNT2Q9NY97 397 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 ZNF346Q9UL40 294 aaKnown RBP13.86□□□□□ -0.19
UPF3A-208ENST00000484246 PDZD2O15018 2839 aa13.86□□□□□ -0.19
UPF3A-208ENST00000484246 ABCA4P78363 2273 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 ABCD4O14678 606 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 ARPC3O15145 178 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 CCNB2O95067 398 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 B4GALT1P15291 398 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 CD53P19397 219 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 ARR3P36575 388 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 RPL4P36578 427 aaKnown RBP13.85□□□□□ -0.19
UPF3A-208ENST00000484246 ACVR1BP36896 505 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 MRPS34P82930 218 aaKnown RBP13.85□□□□□ -0.19
UPF3A-208ENST00000484246 MICAQ29983 383 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 RFX4Q33E94 735 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 THEM4Q5T1C6 240 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 ALKBH2Q6NS38 261 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 RPL13AP3Q6NVV1 102 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 SLC25A47Q6Q0C1 308 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 FOXL2NBQ6ZUU3 175 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 ADCK1Q86TW2 530 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 CLDN22Q8N7P3 220 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 KBTBD8Q8NFY9 601 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 FANK1Q8TC84 345 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 SLC38A2Q96QD8 506 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 DGCR6LQ9BY27 220 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 ZNF224Q9NZL3 707 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 ADAM18Q9Y3Q7 739 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 UGT2A1Q9Y4X1 527 aa13.85□□□□□ -0.19
UPF3A-208ENST00000484246 IGHV1-18A0A0C4DH31 117 aa13.84□□□□□ -0.19
UPF3A-208ENST00000484246 ZNF503-AS2A6NEH8 195 aa13.84□□□□□ -0.19
UPF3A-208ENST00000484246 M0R1B8 84 aa13.84□□□□□ -0.19
UPF3A-208ENST00000484246 IMPA2O14732 288 aa13.84□□□□□ -0.19
UPF3A-208ENST00000484246 FKBP6O75344 327 aa13.84□□□□□ -0.19
UPF3A-208ENST00000484246 SEC14L2O76054 403 aa13.84□□□□□ -0.19
UPF3A-208ENST00000484246 OR8G3PP0DMU2 310 aa13.84□□□□□ -0.19
UPF3A-208ENST00000484246 DNASE1P24855 282 aa13.84□□□□□ -0.19
UPF3A-208ENST00000484246 SLC6A6P31641 620 aa13.84□□□□□ -0.19
UPF3A-208ENST00000484246 ZNF84P51523 738 aa13.84□□□□□ -0.19
UPF3A-208ENST00000484246 ERVK-25P63136 954 aa13.84□□□□□ -0.19
UPF3A-208ENST00000484246 KRR1Q13601 381 aaKnown RBP13.84□□□□□ -0.19
UPF3A-208ENST00000484246 TESK1Q15569 626 aa13.84□□□□□ -0.19
UPF3A-208ENST00000484246 MESTQ5EB52 335 aa13.84□□□□□ -0.19
UPF3A-208ENST00000484246 CCDC121Q6ZUS5 278 aa13.84□□□□□ -0.19
UPF3A-208ENST00000484246 SLC22A24Q8N4F4 322 aa13.84□□□□□ -0.19
UPF3A-208ENST00000484246 SYT14Q8NB59 555 aa13.84□□□□□ -0.19
UPF3A-208ENST00000484246 OR9Q2Q8NGE9 314 aa13.84□□□□□ -0.19
UPF3A-208ENST00000484246 AKAP1Q92667 903 aaKnown RBP eCLIP13.84□□□□□ -0.19
UPF3A-208ENST00000484246 DUS3LQ96G46 650 aaKnown RBP13.84□□□□□ -0.19
UPF3A-208ENST00000484246 Q96M85 177 aa13.84□□□□□ -0.19
UPF3A-208ENST00000484246 ZNF75AQ96N20 296 aa13.84□□□□□ -0.19
UPF3A-208ENST00000484246 ZNF570Q96NI8 536 aa13.84□□□□□ -0.19
UPF3A-208ENST00000484246 SNX18Q96RF0 628 aa13.84□□□□□ -0.19
UPF3A-208ENST00000484246 FOXC2Q99958 501 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms