RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 CCDC134Q9H6E4 229 aa13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 C20orf141Q9NUB4 165 aa13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 GMPR2Q9P2T1 348 aaKnown RBP13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 CDC42EP3Q9UKI2 254 aa13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 CMAHPQ9Y471 501 aa13.57□□□□□ -0.24
CCDC88B-205ENST00000472524 A0A1W2PRG6 482 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 TMEM129A0AVI4 362 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 VWC2LB2RUY7 222 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 NDUFS8O00217 210 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 DHHO43323 396 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 PIP5K1CO60331 668 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 ERCC1P07992 297 aaPredicted RBP13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 QDPRP09417 244 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 IGHV4-31P0DP07 118 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 NR4A1P22736 598 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 AQP2P41181 271 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 NR4A2P43354 598 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 LSM11P83369 360 aaKnown RBP eCLIP13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 GALK2Q01415 458 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 RUNX1T1Q06455 604 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 GKAP1Q5VSY0 366 aaPredicted RBP13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 CYB5R2Q6BCY4 276 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 SYT14Q8NB59 555 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 NOXO1Q8NFA2 376 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 ASB10Q8WXI3 467 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 FOXN4Q96NZ1 517 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 KCNK17Q96T54 332 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 TPK1Q9H3S4 243 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 MYOZ1Q9NP98 299 aaPredicted RBP13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 TMEM38BQ9NVV0 291 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 CMTM6Q9NX76 183 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 FBXO9Q9UK97 447 aaPredicted RBP13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 MED31Q9Y3C7 131 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 SPEF1Q9Y4P9 236 aa13.56□□□□□ -0.24
CCDC88B-205ENST00000472524 LOC390937A0A1W2PQ73 354 aa13.55□□□□□ -0.24
CCDC88B-205ENST00000472524 SLC22A2O15244 555 aa13.55□□□□□ -0.24
CCDC88B-205ENST00000472524 FARS2O95363 451 aaKnown RBP13.55□□□□□ -0.24
CCDC88B-205ENST00000472524 ADRA2AP08913 450 aa13.55□□□□□ -0.24
CCDC88B-205ENST00000472524 OR8G3PP0DMU2 310 aa13.55□□□□□ -0.24
CCDC88B-205ENST00000472524 ZNF35P13682 527 aa13.55□□□□□ -0.24
CCDC88B-205ENST00000472524 MDH1P40925 334 aaKnown RBP13.55□□□□□ -0.24
CCDC88B-205ENST00000472524 YAP1P46937 504 aaKnown RBP13.55□□□□□ -0.24
CCDC88B-205ENST00000472524 MSMPQ1L6U9 139 aa13.55□□□□□ -0.24
CCDC88B-205ENST00000472524 IQCCQ4KMZ1 466 aa13.55□□□□□ -0.24
CCDC88B-205ENST00000472524 OR4K5Q8NGD3 323 aa13.55□□□□□ -0.24
CCDC88B-205ENST00000472524 MOSPD2Q8NHP6 518 aa13.55□□□□□ -0.24
CCDC88B-205ENST00000472524 RP9Q8TA86 221 aaKnown RBP13.55□□□□□ -0.24
CCDC88B-205ENST00000472524 MCHR2Q969V1 340 aa13.55□□□□□ -0.24
CCDC88B-205ENST00000472524 PRRC1Q96M27 445 aa13.55□□□□□ -0.24
CCDC88B-205ENST00000472524 SYT3Q9BQG1 590 aa13.55□□□□□ -0.24
CCDC88B-205ENST00000472524 MRPL37Q9BZE1 423 aaKnown RBP13.55□□□□□ -0.24
CCDC88B-205ENST00000472524 BPESC1Q9GZL8 116 aa13.55□□□□□ -0.24
CCDC88B-205ENST00000472524 DENND2DQ9H6A0 471 aaPredicted RBP13.55□□□□□ -0.24
CCDC88B-205ENST00000472524 RNF121Q9H920 327 aa13.55□□□□□ -0.24
CCDC88B-205ENST00000472524 INIPQ9NRY2 104 aa13.55□□□□□ -0.24
CCDC88B-205ENST00000472524 FBXL3Q9UKT7 428 aa13.55□□□□□ -0.24
CCDC88B-205ENST00000472524 FZR1Q9UM11 496 aa13.55□□□□□ -0.24
CCDC88B-205ENST00000472524 IGHV4-61A0A0C4DH41 118 aa13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 ENTPD5O75356 428 aa13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 TRMUO75648 421 aaKnown RBP13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 THRBP10828 461 aa13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 COX4I1P13073 169 aa13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 APEHP13798 732 aaKnown RBP13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 DAOP14920 347 aa13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 ACADSP16219 412 aa13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 LSP1P33241 339 aa13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 GLRXP35754 106 aa13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 DAP3P51398 398 aaKnown RBP13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 ZNF84P51523 738 aa13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 SELENOWP63302 87 aa13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 ST3GAL3Q11203 375 aa13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 TOP3AQ13472 1001 aaPredicted RBP13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 TMEM53Q6P2H8 277 aa13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 ARPINQ7Z6K5 226 aa13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 VTCN1Q7Z7D3 282 aa13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 ZNF584Q8IVC4 421 aa13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 ARIH2OSQ8N7S6 290 aa13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 NEU4Q8WWR8 484 aaPredicted RBP13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 LZICQ8WZA0 190 aa13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 MRPL24Q96A35 216 aaKnown RBP13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 BEX2Q9BXY8 128 aa13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 MED4Q9NPJ6 270 aa13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 A4GNTQ9UNA3 340 aa13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 AP3M1Q9Y2T2 418 aa13.54□□□□□ -0.24
CCDC88B-205ENST00000472524 J3KTA2 159 aa13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 GSTA4O15217 222 aa13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 STAMBPO95630 424 aa13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 ZNF682O95780 498 aa13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 IGF2P01344 180 aa13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 SERPINA5P05154 406 aa13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 IGFBP1P08833 259 aaPredicted RBP13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 IFI30P13284 250 aa13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 IFNA8P32881 189 aa13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 GZMKP49863 264 aa13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 SLC7A2P52569 658 aa13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 RPS23P62266 143 aaKnown RBP13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 SRSF2Q01130 221 aaKnown RBP13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 LIPEQ05469 1076 aa13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 LAPTM4AQ15012 233 aa13.53□□□□□ -0.24
CCDC88B-205ENST00000472524 KRTAP24-1Q3LI83 254 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms