RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 CBLP22681 906 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 GATA3P23771 443 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 PRPH2P23942 346 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 ATP5F1P24539 256 aaPredicted RBP4.41□□□□□ -1.7
PTPN4-209ENST00000469511 GCAP28676 217 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 POLR2HP52434 150 aaKnown RBP4.41□□□□□ -1.7
PTPN4-209ENST00000469511 RAB1AP62820 205 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 CALCOCO2Q13137 446 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 PTGR1Q14914 329 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 MFSD13AQ14CX5 517 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 GSG1Q2KHT4 349 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 TRMT5Q32P41 509 aaKnown RBP4.41□□□□□ -1.7
PTPN4-209ENST00000469511 SPDYE7PQ495Y7 208 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 GALNTL6Q49A17 601 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 ZNF362Q5T0B9 420 aaPredicted RBP4.41□□□□□ -1.7
PTPN4-209ENST00000469511 GKAP1Q5VSY0 366 aaPredicted RBP4.41□□□□□ -1.7
PTPN4-209ENST00000469511 PRAMEF8Q5VWM4 474 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 PRAMEF7Q5VXH5 474 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 MBNL2Q5VZF2 373 aaKnown RBP4.41□□□□□ -1.7
PTPN4-209ENST00000469511 RGS7BPQ6MZT1 257 aaPredicted RBP4.41□□□□□ -1.7
PTPN4-209ENST00000469511 TNFAIP8L2Q6P589 184 aaPredicted RBP4.41□□□□□ -1.7
PTPN4-209ENST00000469511 TMEM154Q6P9G4 183 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 NHLRC1Q6VVB1 395 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 Q6YL49 198 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 ZNF813Q6ZN06 617 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 ZCCHC23Q6ZST2 131 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 Q6ZSV7 163 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 C9orf139Q6ZV77 190 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 ABHD12BQ7Z5M8 362 aaPredicted RBP4.41□□□□□ -1.7
PTPN4-209ENST00000469511 SKA3Q8IX90 412 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 TMEM123Q8N131 208 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 LYG1Q8N1E2 194 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 ARFGAP2Q8N6H7 521 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 C11orf44Q8N8P7 122 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 ANKFN1Q8N957 763 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 OR56A1Q8NGH5 318 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 OR10S1Q8NGN2 331 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 PSMA8Q8TAA3 256 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 ST7LQ8TDW4 575 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 XAGE5Q8WWM1 108 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 GEMIN6Q8WXD5 167 aaKnown RBP4.41□□□□□ -1.7
PTPN4-209ENST00000469511 OR5P2Q8WZ92 322 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 RAB1CQ92928 201 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 SLC25A36Q96CQ1 311 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 DDIT4LQ96D03 193 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 OR2M2Q96R28 347 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 PAFAH2Q99487 392 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 CCT7Q99832 543 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 C1orf50Q9BV19 199 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 PTDSS2Q9BVG9 487 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 TOR3AQ9H497 397 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 PRDM13Q9H4Q3 707 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 RRAGDQ9NQL2 400 aaPredicted RBP4.41□□□□□ -1.7
PTPN4-209ENST00000469511 RLIMQ9NVW2 624 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 C1orf109Q9NX04 203 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 STK38LQ9Y2H1 464 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 WDR45Q9Y484 360 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 NOX1Q9Y5S8 564 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 HYDINQ4G0P3 5121 aa4.41□□□□□ -1.7
PTPN4-209ENST00000469511 A0A1B0GUS0 222 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 ZNF99A8MXY4 864 aaPredicted RBP4.4□□□□□ -1.71
PTPN4-209ENST00000469511 MS4A18H0YCH9 400 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 K7EIL1 84 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 LSM1O15116 133 aaKnown RBP4.4□□□□□ -1.71
PTPN4-209ENST00000469511 CFLARO15519 480 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 TPD52L2O43399 206 aaKnown RBP4.4□□□□□ -1.71
PTPN4-209ENST00000469511 NPIPB7O75200 414 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 IGHMP01871 453 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 CRYBA1P05813 215 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 LCKP06239 509 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 CSF1P09603 554 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 UROSP10746 265 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 PNMTP11086 282 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 OSMP13725 252 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 PRG2P13727 222 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 ZNF250P15622 560 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 TCP1P17987 556 aaKnown RBP4.4□□□□□ -1.71
PTPN4-209ENST00000469511 PI3P19957 117 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 TAC1P20366 129 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 SOAT1P35610 550 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 MPV17P39210 176 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 ACAA2P42765 397 aaKnown RBP4.4□□□□□ -1.71
PTPN4-209ENST00000469511 ETV4P43268 484 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 RPS5P46782 204 aaKnown RBP4.4□□□□□ -1.71
PTPN4-209ENST00000469511 MTNR1AP48039 350 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 SH3BGRP55822 239 aaPredicted RBP4.4□□□□□ -1.71
PTPN4-209ENST00000469511 HOXC5Q00444 222 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 EGR4Q05215 589 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 EPS8Q12929 822 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 TOP3AQ13472 1001 aaPredicted RBP4.4□□□□□ -1.71
PTPN4-209ENST00000469511 ZMYND11Q15326 602 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 MAPK11Q15759 364 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 SYPL1Q16563 259 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 HFEQ30201 348 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 MS4A18Q3C1V0 323 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 SPATA46Q5T0L3 261 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 C1orf140Q5VVS0 124 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 ATG16L1Q676U5 607 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 REP15Q6BDI9 236 aa4.4□□□□□ -1.71
PTPN4-209ENST00000469511 SYT10Q6XYQ8 523 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms