RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 OR1E2P47887 323 aa16.51■□□□□ 0.23
COL7A1-207ENST00000467985 PTDSS1P48651 473 aaKnown RBP16.51■□□□□ 0.23
COL7A1-207ENST00000467985 RAB1AP62820 205 aa16.51■□□□□ 0.23
COL7A1-207ENST00000467985 SELENOWP63302 87 aa16.51■□□□□ 0.23
COL7A1-207ENST00000467985 VLDLRP98155 873 aa16.51■□□□□ 0.23
COL7A1-207ENST00000467985 PIGFQ07326 219 aa16.51■□□□□ 0.23
COL7A1-207ENST00000467985 SNTB2Q13425 540 aaKnown RBP16.51■□□□□ 0.23
COL7A1-207ENST00000467985 TMEM249Q2WGJ8 235 aa16.51■□□□□ 0.23
COL7A1-207ENST00000467985 HACD2Q6Y1H2 254 aa16.51■□□□□ 0.23
COL7A1-207ENST00000467985 DPPA2Q7Z7J5 298 aa16.51■□□□□ 0.23
COL7A1-207ENST00000467985 NKAIN4Q8IVV8 208 aa16.51■□□□□ 0.23
COL7A1-207ENST00000467985 LIPHQ8WWY8 451 aa16.51■□□□□ 0.23
COL7A1-207ENST00000467985 TPD52L3Q96J77 140 aa16.51■□□□□ 0.23
COL7A1-207ENST00000467985 HOPXQ9BPY8 73 aaPredicted RBP16.51■□□□□ 0.23
COL7A1-207ENST00000467985 PIMREGQ9BSJ6 248 aa16.51■□□□□ 0.23
COL7A1-207ENST00000467985 YAE1D1Q9NRH1 226 aa16.51■□□□□ 0.23
COL7A1-207ENST00000467985 STX18Q9P2W9 335 aaKnown RBP16.51■□□□□ 0.23
COL7A1-207ENST00000467985 MED31Q9Y3C7 131 aa16.51■□□□□ 0.23
COL7A1-207ENST00000467985 LOC390937A0A1W2PQ73 354 aa16.5■□□□□ 0.23
COL7A1-207ENST00000467985 MCIDASD6RGH6 385 aa16.5■□□□□ 0.23
COL7A1-207ENST00000467985 DHHO43323 396 aa16.5■□□□□ 0.23
COL7A1-207ENST00000467985 LY6HO94772 140 aa16.5■□□□□ 0.23
COL7A1-207ENST00000467985 FARS2O95363 451 aaKnown RBP16.5■□□□□ 0.23
COL7A1-207ENST00000467985 PGA4P0DJD7 388 aa16.5■□□□□ 0.23
COL7A1-207ENST00000467985 PGA3P0DJD8 388 aa16.5■□□□□ 0.23
COL7A1-207ENST00000467985 OR8G3PP0DMU2 310 aa16.5■□□□□ 0.23
COL7A1-207ENST00000467985 USF1P22415 310 aaPredicted RBP16.5■□□□□ 0.23
COL7A1-207ENST00000467985 GIPRP48546 466 aa16.5■□□□□ 0.23
COL7A1-207ENST00000467985 DAP3P51398 398 aaKnown RBP16.5■□□□□ 0.23
COL7A1-207ENST00000467985 UGT2B15P54855 530 aa16.5■□□□□ 0.23
COL7A1-207ENST00000467985 CLRN1P58418 232 aa16.5■□□□□ 0.23
COL7A1-207ENST00000467985 RPL18Q07020 188 aaKnown RBP16.5■□□□□ 0.23
COL7A1-207ENST00000467985 ST3GAL3Q11203 375 aa16.5■□□□□ 0.23
COL7A1-207ENST00000467985 MELKQ14680 651 aa16.5■□□□□ 0.23
COL7A1-207ENST00000467985 NRN1LQ496H8 165 aa16.5■□□□□ 0.23
COL7A1-207ENST00000467985 LRFN4Q6PJG9 635 aa16.5■□□□□ 0.23
COL7A1-207ENST00000467985 PRIMA1Q86XR5 153 aa16.5■□□□□ 0.23
COL7A1-207ENST00000467985 SLC22A24Q8N4F4 322 aa16.5■□□□□ 0.23
COL7A1-207ENST00000467985 ZNF540Q8NDQ6 660 aa16.5■□□□□ 0.23
COL7A1-207ENST00000467985 PFN4Q8NHR9 129 aa16.5■□□□□ 0.23
COL7A1-207ENST00000467985 ZNF75AQ96N20 296 aa16.5■□□□□ 0.23
COL7A1-207ENST00000467985 INIPQ9NRY2 104 aa16.5■□□□□ 0.23
COL7A1-207ENST00000467985 TMEM38BQ9NVV0 291 aa16.5■□□□□ 0.23
COL7A1-207ENST00000467985 ZNF224Q9NZL3 707 aa16.5■□□□□ 0.23
COL7A1-207ENST00000467985 CMAHPQ9Y471 501 aa16.5■□□□□ 0.23
COL7A1-207ENST00000467985 CHD3Q12873 2000 aaKnown RBP16.5■□□□□ 0.23
COL7A1-207ENST00000467985 NPIPB13A6NJU9 1138 aa16.49■□□□□ 0.23
COL7A1-207ENST00000467985 A8MV72 311 aaPredicted RBP16.49■□□□□ 0.23
COL7A1-207ENST00000467985 NPIPB4C9JG80 1138 aa16.49■□□□□ 0.23
COL7A1-207ENST00000467985 GPRIN2O60269 458 aa16.49■□□□□ 0.23
COL7A1-207ENST00000467985 MGRN1O60291 552 aa16.49■□□□□ 0.23
COL7A1-207ENST00000467985 ATP5HO75947 161 aa16.49■□□□□ 0.23
COL7A1-207ENST00000467985 QDPRP09417 244 aa16.49■□□□□ 0.23
COL7A1-207ENST00000467985 ZNF35P13682 527 aa16.49■□□□□ 0.23
COL7A1-207ENST00000467985 EVX1P49640 407 aa16.49■□□□□ 0.23
COL7A1-207ENST00000467985 RASSF2P50749 326 aa16.49■□□□□ 0.23
COL7A1-207ENST00000467985 ZNF84P51523 738 aa16.49■□□□□ 0.23
COL7A1-207ENST00000467985 PSME3P61289 254 aa16.49■□□□□ 0.23
COL7A1-207ENST00000467985 RPS23P62266 143 aaKnown RBP16.49■□□□□ 0.23
COL7A1-207ENST00000467985 GALK2Q01415 458 aa16.49■□□□□ 0.23
COL7A1-207ENST00000467985 HIST3H3Q16695 136 aa16.49■□□□□ 0.23
COL7A1-207ENST00000467985 KRT80Q6KB66 452 aa16.49■□□□□ 0.23
COL7A1-207ENST00000467985 SKA3Q8IX90 412 aa16.49■□□□□ 0.23
COL7A1-207ENST00000467985 SVOPLQ8N434 492 aa16.49■□□□□ 0.23
COL7A1-207ENST00000467985 NEU4Q8WWR8 484 aaPredicted RBP16.49■□□□□ 0.23
COL7A1-207ENST00000467985 MS4A3Q96HJ5 214 aa16.49■□□□□ 0.23
COL7A1-207ENST00000467985 PRRC1Q96M27 445 aa16.49■□□□□ 0.23
COL7A1-207ENST00000467985 DOK1Q99704 481 aa16.49■□□□□ 0.23
COL7A1-207ENST00000467985 CMTM6Q9NX76 183 aa16.49■□□□□ 0.23
COL7A1-207ENST00000467985 ADA2Q9NZK5 511 aa16.49■□□□□ 0.23
COL7A1-207ENST00000467985 VWC2LB2RUY7 222 aa16.48■□□□□ 0.23
COL7A1-207ENST00000467985 SERPINA5P05154 406 aa16.48■□□□□ 0.23
COL7A1-207ENST00000467985 F13BP05160 661 aa16.48■□□□□ 0.23
COL7A1-207ENST00000467985 TSPAN19P0C672 248 aa16.48■□□□□ 0.23
COL7A1-207ENST00000467985 GLRXP35754 106 aa16.48■□□□□ 0.23
COL7A1-207ENST00000467985 SLC7A2P52569 658 aa16.48■□□□□ 0.23
COL7A1-207ENST00000467985 LIPEQ05469 1076 aa16.48■□□□□ 0.23
COL7A1-207ENST00000467985 C6orf52Q5T4I8 152 aa16.48■□□□□ 0.23
COL7A1-207ENST00000467985 HIPK1Q86Z02 1210 aa16.48■□□□□ 0.23
COL7A1-207ENST00000467985 SLC15A3Q8IY34 581 aa16.48■□□□□ 0.23
COL7A1-207ENST00000467985 DEFB107AQ8IZN7 70 aa16.48■□□□□ 0.23
COL7A1-207ENST00000467985 PGAM4Q8N0Y7 254 aa16.48■□□□□ 0.23
COL7A1-207ENST00000467985 NOXO1Q8NFA2 376 aa16.48■□□□□ 0.23
COL7A1-207ENST00000467985 SEPHS2Q99611 448 aa16.48■□□□□ 0.23
COL7A1-207ENST00000467985 MRPL13Q9BYD1 178 aaKnown RBP16.48■□□□□ 0.23
COL7A1-207ENST00000467985 C1orf198Q9H425 327 aa16.48■□□□□ 0.23
COL7A1-207ENST00000467985 DYNLRB1Q9NP97 96 aa16.48■□□□□ 0.23
COL7A1-207ENST00000467985 SPAG4Q9NPE6 437 aa16.48■□□□□ 0.23
COL7A1-207ENST00000467985 C20orf141Q9NUB4 165 aa16.48■□□□□ 0.23
COL7A1-207ENST00000467985 FBN1P35555 2871 aaKnown RBP16.48■□□□□ 0.23
COL7A1-207ENST00000467985 ANK3Q12955 4377 aaKnown RBP16.47■□□□□ 0.23
COL7A1-207ENST00000467985 TMEM129A0AVI4 362 aa16.47■□□□□ 0.23
COL7A1-207ENST00000467985 GSTA4O15217 222 aa16.47■□□□□ 0.23
COL7A1-207ENST00000467985 IFNW1P05000 195 aa16.47■□□□□ 0.23
COL7A1-207ENST00000467985 T-ENOLP0DO92 83 aa16.47■□□□□ 0.23
COL7A1-207ENST00000467985 NR2C1P13056 603 aa16.47■□□□□ 0.23
COL7A1-207ENST00000467985 AQP2P41181 271 aa16.47■□□□□ 0.23
COL7A1-207ENST00000467985 NR4A2P43354 598 aa16.47■□□□□ 0.23
COL7A1-207ENST00000467985 LSM11P83369 360 aaKnown RBP eCLIP16.47■□□□□ 0.23
COL7A1-207ENST00000467985 BNIP1Q12981 228 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms