RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 BLOC1S5-TXNDC5H3BN57 136 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 FGF18O76093 207 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 MAPK3P27361 379 aaPredicted RBP10.64□□□□□ -0.71
CPSF3-202ENST00000460593 PGDP52209 483 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 GFOD2Q3B7J2 385 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 C2orf76Q3KRA6 126 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 NAA40Q86UY6 237 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 ZNF227Q86WZ6 799 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 SLC35F3Q8IY50 421 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 SLC2A12Q8TD20 617 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 NAA11Q9BSU3 229 aaPredicted RBP10.64□□□□□ -0.71
CPSF3-202ENST00000460593 A0A1W2PQ45 241 aaPredicted RBP10.64□□□□□ -0.71
CPSF3-202ENST00000460593 A0A1W2PQY0 241 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 GPRIN2O60269 458 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 WNT11O96014 354 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 ITGB2P05107 769 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 VAMP1P23763 118 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 PTAFRP25105 342 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 DDX6P26196 483 aaKnown RBP eCLIP10.64□□□□□ -0.71
CPSF3-202ENST00000460593 CDKN2AP42771 156 aaKnown RBP10.64□□□□□ -0.71
CPSF3-202ENST00000460593 SKP1P63208 163 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 TDGQ13569 410 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 GAS6Q14393 721 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 ELAVL1Q15717 326 aaKnown RBP10.64□□□□□ -0.71
CPSF3-202ENST00000460593 MPPED2Q15777 294 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 METRNLQ641Q3 311 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 PRSS41Q7RTY9 318 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 ARMC10Q8N2F6 343 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 C14orf79Q96F83 325 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 CLCC1Q96S66 551 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 GAS2L1Q99501 681 aaPredicted RBP10.64□□□□□ -0.71
CPSF3-202ENST00000460593 ALG12Q9BV10 488 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 ZNF350Q9GZX5 532 aa10.64□□□□□ -0.71
CPSF3-202ENST00000460593 A0A0A6YYC8 382 aaPredicted RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 A0A0B4J2E0 115 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 A0A1B0GX12 115 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 ELOA3DA6NLF2 546 aaPredicted RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 I3L1I5 382 aaPredicted RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 UPK3AO75631 287 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 DAOP14920 347 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 PEBP1P30086 187 aaKnown RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 ELOA3BQ3SY89 546 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 MOGAT2Q3SYC2 334 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 EXOSC6Q5RKV6 272 aaKnown RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 ELOA3Q8NG57 546 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 OR4E2Q8NGC2 313 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 ISOC2Q96AB3 205 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 CCDC74AQ96AQ1 378 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 ZBTB8AQ96BR9 441 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 MRPL48Q96GC5 212 aaKnown RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 CNTNAP3BQ96NU0 1288 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 AMELYQ99218 206 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 SLC6A7Q99884 636 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 MFRPQ9BY79 579 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 CGGBP1Q9UFW8 167 aaPredicted RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 VSIG4Q9Y279 399 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 SLC22A7Q9Y694 548 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 OBSL1O75147 1896 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 TBC1D3KA0A087X1G2 549 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 TBC1D3BA6NDS4 549 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 TBC1D3FA6NER0 549 aaPredicted RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 GMFGO60234 142 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 NDUFB2O95178 105 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 F13BP05160 661 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 DBIP07108 87 aaKnown RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 C8AP07357 584 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 CT62P0C5K7 136 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 ADRB3P13945 408 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 AGTR1P30556 359 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 CCKBRP32239 447 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 DCDP81605 110 aaKnown RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 ILF3Q12906 894 aaKnown RBP eCLIP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 PPP1R1AQ13522 171 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 ALKBH1Q13686 389 aaKnown RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 EIF2B1Q14232 305 aaKnown RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 SMCO1Q147U7 214 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 INPP5JQ15735 1006 aaPredicted RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 TMEM35AQ53FP2 167 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 ACER2Q5QJU3 275 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 TBC1D3GQ6DHY5 549 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 RPL13AP3Q6NVV1 102 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 ANKRD16Q6P6B7 361 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 KIRREL2Q6UWL6 708 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 ENPP7Q6UWV6 458 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 ACOT7LQ6ZUV0 252 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 FAM122BQ7Z309 247 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 RTN4RL2Q86UN3 420 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 POMGNT2Q8NAT1 580 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 TMEM52Q8NDY8 209 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 OR5AP2Q8NGF4 316 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 OR52E1Q8NGJ3 308 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 OR6S1Q8NH40 331 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 SMARCD2Q92925 531 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 ZC3H10Q96K80 434 aaKnown RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 LAT2Q9GZY6 243 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 PARP12Q9H0J9 701 aaKnown RBP10.63□□□□□ -0.71
CPSF3-202ENST00000460593 UQCC1Q9NVA1 299 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 GPR34Q9UPC5 381 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 TMED7Q9Y3B3 224 aa10.63□□□□□ -0.71
CPSF3-202ENST00000460593 IGLON5A6NGN9 336 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms