RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 C3orf30Q96M34 536 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 SMG9Q9H0W8 520 aaKnown RBP12.29□□□□□ -0.44
USP40-208ENST00000450966 ALX4Q9H161 411 aaPredicted RBP12.29□□□□□ -0.44
USP40-208ENST00000450966 C1orf198Q9H425 327 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 CLMPQ9H6B4 373 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.29□□□□□ -0.44
USP40-208ENST00000450966 AK3Q9UIJ7 227 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 TRBV23-1A0A0A0MS06 115 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 SOX1O00570 391 aaPredicted RBP12.29□□□□□ -0.44
USP40-208ENST00000450966 C8orf89P0DMQ9 161 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 GLI3P10071 1580 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 CCNOP22674 350 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 CD82P27701 267 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 SLC16A12Q6ZSM3 486 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 TGIF2LXQ8IUE1 241 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 OR51S1Q8NGJ8 323 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 GPX8Q8TED1 209 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 ATOH1Q92858 354 aaPredicted RBP12.29□□□□□ -0.44
USP40-208ENST00000450966 GCDHQ92947 438 aaPredicted RBP12.29□□□□□ -0.44
USP40-208ENST00000450966 BORCS8Q96FH0 119 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 CPPED1Q9BRF8 314 aaPredicted RBP12.29□□□□□ -0.44
USP40-208ENST00000450966 DEFB126Q9BYW3 111 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 GCM1Q9NP62 436 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 PDLIM7Q9NR12 457 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 ADAM29Q9UKF5 820 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 A0A1W2PPH5 198 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 PAPLNO95428 1278 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 ANKRD16Q6P6B7 361 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 BRICD5Q6PL45 260 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 WDR74Q6RFH5 385 aaPredicted RBP12.29□□□□□ -0.44
USP40-208ENST00000450966 HTR3DQ70Z44 454 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 ECHDC3Q96DC8 303 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 WDR89Q96FK6 387 aaPredicted RBP12.29□□□□□ -0.44
USP40-208ENST00000450966 NXF2Q9GZY0 626 aaKnown RBP12.29□□□□□ -0.44
USP40-208ENST00000450966 PLEKHA2Q9HB19 425 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 ZNF331Q9NQX6 463 aaPredicted RBP12.29□□□□□ -0.44
USP40-208ENST00000450966 PLAGL1Q9UM63 463 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 ZNF593O00488 134 aaPredicted RBP12.29□□□□□ -0.44
USP40-208ENST00000450966 RNASET2O00584 256 aaKnown RBP12.29□□□□□ -0.44
USP40-208ENST00000450966 ABCD4O14678 606 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 LDB2O43679 373 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 APEHP13798 732 aaKnown RBP12.29□□□□□ -0.44
USP40-208ENST00000450966 GRPRP30550 384 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 HTR6P50406 440 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 SLC14A2Q15849 920 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 MEX3BQ6ZN04 569 aaKnown RBP12.29□□□□□ -0.44
USP40-208ENST00000450966 Q6ZVL8 140 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 OVCH1Q7RTY7 1134 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 CLSTN3Q9BQT9 956 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 ST6GALNAC5Q9BVH7 336 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 PADI1Q9ULC6 663 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 MMP24Q9Y5R2 645 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 TNFSF12O43508 249 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 CLN5O75503 358 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 SERPINE2P07093 398 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 IL1RNP18510 177 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 NTF3P20783 257 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 NOVA1P51513 510 aaKnown RBP12.29□□□□□ -0.44
USP40-208ENST00000450966 CLRN1P58418 232 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 HTRA3P83110 453 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 NSUN5P2Q63ZY6 315 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 SYT13Q7L8C5 426 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 HCAR1Q9BXC0 346 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 TMEM9BQ9NQ34 198 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 KLHL13Q9P2N7 655 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 PITPNC1Q9UKF7 332 aa12.29□□□□□ -0.44
USP40-208ENST00000450966 MMP2P08253 660 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 LAMP1P11279 417 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 KITLGP21583 273 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 TBXA2RP21731 343 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 ITGB8P26012 769 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 FXYD4P59646 89 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 NCR3LG1Q68D85 454 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 TMEM182Q6ZP80 229 aaPredicted RBP12.28□□□□□ -0.44
USP40-208ENST00000450966 TP53I13Q8NBR0 393 aaPredicted RBP12.28□□□□□ -0.44
USP40-208ENST00000450966 OR51T1Q8NGJ9 327 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 OR4K13Q8NH42 304 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 GABARAPL3Q9BY60 117 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 HRO43593 1189 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 ZNF888P0CJ79 500 aaPredicted RBP12.28□□□□□ -0.44
USP40-208ENST00000450966 CALCBP10092 127 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 EN2P19622 333 aaPredicted RBP12.28□□□□□ -0.44
USP40-208ENST00000450966 FOXA1P55317 472 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 ASPGQ86U10 573 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 ZNF485Q8NCK3 441 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 TSLPQ969D9 159 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 DTD2Q96FN9 168 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 RHOVQ96L33 236 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 NAV1Q8NEY1 1877 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 TCRBV16S1A1N1A0A5B0 115 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 TMEM225Q6GV28 225 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 C11orf87Q6NUJ2 197 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 C15orf39Q6ZRI6 1047 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 FJX1Q86VR8 437 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 SLC35G3Q8N808 338 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 ZNF321PQ8N8H1 164 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 OR52I2Q8NH67 350 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 RHBDD1Q8TEB9 315 aa12.28□□□□□ -0.44
USP40-208ENST00000450966 GRXCR1A8MXD5 290 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms