RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 SLC16A7O60669 478 aa12.96□□□□□ -0.33
TNF-208ENST00000449264 SS18L1O75177 396 aaPredicted RBP12.96□□□□□ -0.33
TNF-208ENST00000449264 IGHV3-9P01782 118 aa12.96□□□□□ -0.33
TNF-208ENST00000449264 CTLA4P16410 223 aa12.96□□□□□ -0.33
TNF-208ENST00000449264 CENPAP49450 140 aa12.96□□□□□ -0.33
TNF-208ENST00000449264 OR2A2Q6IF42 318 aa12.96□□□□□ -0.33
TNF-208ENST00000449264 B3GLCTQ6Y288 498 aa12.96□□□□□ -0.33
TNF-208ENST00000449264 SEM1Q6ZVN7 128 aa12.96□□□□□ -0.33
TNF-208ENST00000449264 NUFIP2Q7Z417 695 aaKnown RBP12.96□□□□□ -0.33
TNF-208ENST00000449264 OR2T4Q8NH00 348 aa12.96□□□□□ -0.33
TNF-208ENST00000449264 NSMAFQ92636 917 aa12.96□□□□□ -0.33
TNF-208ENST00000449264 RFKQ969G6 155 aa12.96□□□□□ -0.33
TNF-208ENST00000449264 FOXN4Q96NZ1 517 aa12.96□□□□□ -0.33
TNF-208ENST00000449264 ALKBH3Q96Q83 286 aaPredicted RBP12.96□□□□□ -0.33
TNF-208ENST00000449264 SNX18Q96RF0 628 aa12.96□□□□□ -0.33
TNF-208ENST00000449264 RHNO1Q9BSD3 238 aa12.96□□□□□ -0.33
TNF-208ENST00000449264 MRPL13Q9BYD1 178 aaKnown RBP12.96□□□□□ -0.33
TNF-208ENST00000449264 NMNAT2Q9BZQ4 307 aa12.96□□□□□ -0.33
TNF-208ENST00000449264 MBD3L4A6NDZ8 208 aaPredicted RBP12.96□□□□□ -0.34
TNF-208ENST00000449264 MBD3L3A6NE82 208 aaPredicted RBP12.96□□□□□ -0.34
TNF-208ENST00000449264 MBD3L5A6NJ08 208 aaPredicted RBP12.96□□□□□ -0.34
TNF-208ENST00000449264 SNTNA6NMZ2 147 aa12.96□□□□□ -0.34
TNF-208ENST00000449264 SLC2A5P22732 501 aa12.96□□□□□ -0.34
TNF-208ENST00000449264 EDNRAP25101 427 aa12.96□□□□□ -0.34
TNF-208ENST00000449264 CHN2P52757 468 aa12.96□□□□□ -0.34
TNF-208ENST00000449264 SLC25A1P53007 311 aa12.96□□□□□ -0.34
TNF-208ENST00000449264 TEKQ02763 1124 aa12.96□□□□□ -0.34
TNF-208ENST00000449264 ZNF91Q05481 1191 aa12.96□□□□□ -0.34
TNF-208ENST00000449264 SLC25A30Q5SVS4 291 aa12.96□□□□□ -0.34
TNF-208ENST00000449264 ZNF100Q8IYN0 542 aa12.96□□□□□ -0.34
TNF-208ENST00000449264 OR6V1Q8N148 313 aa12.96□□□□□ -0.34
TNF-208ENST00000449264 MBD3L2Q8NHZ7 208 aaPredicted RBP12.96□□□□□ -0.34
TNF-208ENST00000449264 ZNRF4Q8WWF5 429 aa12.96□□□□□ -0.34
TNF-208ENST00000449264 APH1AQ96BI3 265 aa12.96□□□□□ -0.34
TNF-208ENST00000449264 BBC3Q96PG8 261 aaPredicted RBP12.96□□□□□ -0.34
TNF-208ENST00000449264 RBP7Q96R05 134 aa12.96□□□□□ -0.34
TNF-208ENST00000449264 GP6Q9HCN6 339 aa12.96□□□□□ -0.34
TNF-208ENST00000449264 GLRX2Q9NS18 164 aa12.96□□□□□ -0.34
TNF-208ENST00000449264 PARPBPQ9NWS1 579 aa12.96□□□□□ -0.34
TNF-208ENST00000449264 GLTPQ9NZD2 209 aa12.96□□□□□ -0.34
TNF-208ENST00000449264 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.96□□□□□ -0.34
TNF-208ENST00000449264 EMC9Q9Y3B6 208 aa12.96□□□□□ -0.34
TNF-208ENST00000449264 KMT2BQ9UMN6 2715 aaPredicted RBP12.95□□□□□ -0.34
TNF-208ENST00000449264 IGKV1D-43A0A0B4J1Z2 117 aa12.95□□□□□ -0.34
TNF-208ENST00000449264 TRGV8A0A0C4DH27 118 aa12.95□□□□□ -0.34
TNF-208ENST00000449264 SH3D21A4FU49 640 aa12.95□□□□□ -0.34
TNF-208ENST00000449264 CCDC182A6NF36 153 aa12.95□□□□□ -0.34
TNF-208ENST00000449264 KRT33AO76009 404 aa12.95□□□□□ -0.34
TNF-208ENST00000449264 APOL3O95236 402 aa12.95□□□□□ -0.34
TNF-208ENST00000449264 HOXD4P09016 255 aaPredicted RBP12.95□□□□□ -0.34
TNF-208ENST00000449264 QDPRP09417 244 aa12.95□□□□□ -0.34
TNF-208ENST00000449264 DBTP11182 482 aaKnown RBP12.95□□□□□ -0.34
TNF-208ENST00000449264 HTR1FP30939 366 aa12.95□□□□□ -0.34
TNF-208ENST00000449264 FOXF2Q12947 444 aa12.95□□□□□ -0.34
TNF-208ENST00000449264 ETFDHQ16134 617 aa12.95□□□□□ -0.34
TNF-208ENST00000449264 PHYHD1Q5SRE7 291 aa12.95□□□□□ -0.34
TNF-208ENST00000449264 DNM1P34Q6PK57 102 aa12.95□□□□□ -0.34
TNF-208ENST00000449264 MEPCEQ7L2J0 689 aaKnown RBP12.95□□□□□ -0.34
TNF-208ENST00000449264 GPR137CQ8N3F9 429 aa12.95□□□□□ -0.34
TNF-208ENST00000449264 TMEM54Q969K7 222 aa12.95□□□□□ -0.34
TNF-208ENST00000449264 MCHR2Q969V1 340 aa12.95□□□□□ -0.34
TNF-208ENST00000449264 ZMYND19Q96E35 227 aaPredicted RBP12.95□□□□□ -0.34
TNF-208ENST00000449264 ULBP2Q9BZM5 246 aa12.95□□□□□ -0.34
TNF-208ENST00000449264 SLCO5A1Q9H2Y9 848 aa12.95□□□□□ -0.34
TNF-208ENST00000449264 FOXD3Q9UJU5 478 aaPredicted RBP12.95□□□□□ -0.34
TNF-208ENST00000449264 MYRFQ9Y2G1 1151 aa12.95□□□□□ -0.34
TNF-208ENST00000449264 PCNX1Q96RV3 2341 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 SLC22A31A6NKX4 558 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 CENPBD1B2RD01 187 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 AHCYL1O43865 530 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 UPK3AO75631 287 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 TOXO94900 526 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 GPANK1O95872 356 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 IL2RAP01589 272 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 RPSAP08865 295 aaKnown RBP12.94□□□□□ -0.34
TNF-208ENST00000449264 MRPL3P09001 348 aaKnown RBP12.94□□□□□ -0.34
TNF-208ENST00000449264 TMIGD3P0DMS9 266 aaPredicted RBP12.94□□□□□ -0.34
TNF-208ENST00000449264 NR2C1P13056 603 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 CRABP1P29762 137 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 GSTT1P30711 240 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 CASP6P55212 293 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 MRPL49Q13405 166 aaKnown RBP12.94□□□□□ -0.34
TNF-208ENST00000449264 RBM48Q5RL73 367 aaKnown RBP12.94□□□□□ -0.34
TNF-208ENST00000449264 THEM4Q5T1C6 240 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 LCN1P1Q5VSP4 162 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 LYPD4Q6UWN0 246 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 NCCRP1Q6ZVX7 275 aaPredicted RBP12.94□□□□□ -0.34
TNF-208ENST00000449264 AHSA2Q719I0 299 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 FAM214BQ7L5A3 538 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 SHFQ7M4L6 423 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.94□□□□□ -0.34
TNF-208ENST00000449264 C20orf196Q8IYI0 205 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 NAXEQ8NCW5 288 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 ZNF540Q8NDQ6 660 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 KISS1RQ969F8 398 aaPredicted RBP12.94□□□□□ -0.34
TNF-208ENST00000449264 RNFT2Q96EX2 444 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 TTYH2Q9BSA4 534 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 SCN3BQ9NY72 215 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 BLOC1S6Q9UL45 172 aa12.94□□□□□ -0.34
TNF-208ENST00000449264 B9D1Q9UPM9 204 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms