RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 ZP4Q12836 540 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 TBC1D28Q2M2D7 210 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 SLC16A14Q7RTX9 510 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 CARM1Q86X55 608 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 FAM216AQ8WUB2 273 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 RAB1CQ92928 201 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 TMEM54Q969K7 222 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 RAB39BQ96DA2 213 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 TIMD4Q96H15 378 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 PLA2G12AQ9BZM1 189 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 BCL2L14Q9BZR8 327 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 RABEP2Q9H5N1 569 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 NANSQ9NR45 359 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 SLC25A37Q9NYZ2 338 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 RAB21Q9UL25 225 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 SVEP1Q4LDE5 3571 aa11.39□□□□□ -0.59
HMGB3-204ENST00000448905 A0A0G2JMP0 313 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 A0A0X1KG70 313 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 FAM157AC9JC47 383 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 DHHO43323 396 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 CHP2O43745 196 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 MFN2O95140 757 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 BCL10O95999 233 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 QDPRP09417 244 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 PATE4P0C8F1 98 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 ZNF250P15622 560 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 AQP1P29972 269 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 LIMS1P48059 325 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 ZNF84P51523 738 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 UCP2P55851 309 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 CCL8P80075 99 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 MSMPQ1L6U9 139 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 HFEQ30201 348 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 ALKBH6Q3KRA9 238 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 NRN1LQ496H8 165 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 FAM209AQ5JX71 171 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 LRFN4Q6PJG9 635 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 LINC00114Q6XXX2 140 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 MAVSQ7Z434 540 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 PEG10Q86TG7 708 aaKnown RBP11.38□□□□□ -0.59
HMGB3-204ENST00000448905 C11orf65Q8NCR3 313 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 CPEB3Q8NE35 698 aaKnown RBP11.38□□□□□ -0.59
HMGB3-204ENST00000448905 OR4M2Q8NGB6 313 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 YIPF5Q969M3 257 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 SH3GL3Q99963 347 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 RBM4Q9BWF3 364 aaKnown RBP11.38□□□□□ -0.59
HMGB3-204ENST00000448905 SUCNR1Q9BXA5 334 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 ZNF665Q9H7R5 613 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 TMEM38BQ9NVV0 291 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 ZNF224Q9NZL3 707 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 VAPAQ9P0L0 249 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 SLAMF8Q9P0V8 285 aa11.38□□□□□ -0.59
HMGB3-204ENST00000448905 EIF3KQ9UBQ5 218 aaKnown RBP11.38□□□□□ -0.59
HMGB3-204ENST00000448905 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.37□□□□□ -0.593e-8■■■■■ 32.7
HMGB3-204ENST00000448905 IGHV1-69-2A0A0G2JMI3 117 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 LRRN3E7EW58 273 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 J3QLI3 93 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 M0QX08 132 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 CDC14BO60729 498 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 MPZL1O95297 269 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 CH25HO95992 272 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 IGHG1P01857 330 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 FAM157BP0CG42 384 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 UMPSP11172 480 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 HOXB9P17482 250 aaPredicted RBP11.37□□□□□ -0.59
HMGB3-204ENST00000448905 GATA3P23771 443 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 FPR2P25090 351 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 APLNRP35414 380 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 MAGEB1P43366 347 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 COMPP49747 757 aaPredicted RBP11.37□□□□□ -0.59
HMGB3-204ENST00000448905 CLRN1P58418 232 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 MVKQ03426 396 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 PAGE3Q5JUK9 113 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 THSD4Q6ZMP0 1018 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 HDDC2Q7Z4H3 204 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 FUNDC1Q8IVP5 155 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 SLC30A8Q8IWU4 369 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 C1orf174Q8IYL3 243 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 SMYD1Q8NB12 490 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 NANPQ8TBE9 248 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 SLC26A7Q8TE54 656 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 MPP4Q96JB8 637 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 CCDC28BQ9BUN5 200 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 RSPO3Q9BXY4 272 aaPredicted RBP11.37□□□□□ -0.59
HMGB3-204ENST00000448905 SLC19A3Q9BZV2 496 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 TAS2R5Q9NYW4 299 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 MYEF2Q9P2K5 600 aaKnown RBP11.37□□□□□ -0.59
HMGB3-204ENST00000448905 ZNF229Q9UJW7 825 aa11.37□□□□□ -0.59
HMGB3-204ENST00000448905 ARFGEF3Q5TH69 2177 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 A0A1W2PRG6 482 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 PLSCR5A0PG75 271 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 TMEM89A2RUT3 159 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 CLDN25C9JDP6 229 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 BLOC1S5-TXNDC5H3BN57 136 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 WNT9BO14905 357 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 TPST2O60704 377 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 RP2O75695 350 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 SNAP29O95721 258 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 EPHA1P21709 976 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 GCH1P30793 250 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms