RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 TAS2R13Q9NYV9 303 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 MBD2Q9UBB5 411 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 SEC14L4Q9UDX3 406 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 RIMS3Q9UJD0 308 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 GSTK1Q9Y2Q3 226 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 DHRS7Q9Y394 339 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 WDR45Q9Y484 360 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 TIMM22Q9Y584 194 aa3.43□□□□□ -1.86
VPS29-202ENST00000447578 TP53BP1Q12888 1972 aaPredicted RBP3.42□□□□□ -1.86
VPS29-202ENST00000447578 THSD7BQ9C0I4 1608 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 A0A0J9YYE9 177 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 A0A0U1RQS6 177 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 ZNF840PA6NDX5 716 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 PRORSD1PA6NEY8 169 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 IGLON5A6NGN9 336 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 FBLL1A6NHQ2 334 aaKnown RBP3.42□□□□□ -1.86
VPS29-202ENST00000447578 PCP4L1A6NKN8 68 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 SYCE1LA8MT33 242 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 IQCF5A8MTL0 148 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 BBIP1A8MTZ0 92 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 E5RI56 91 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 K7EQD1 137 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 AZIN1O14977 448 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 ARPC3O15145 178 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 PFDN6O15212 129 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 STX7O15400 261 aaKnown RBP3.42□□□□□ -1.86
VPS29-202ENST00000447578 DENRO43583 198 aaKnown RBP3.42□□□□□ -1.86
VPS29-202ENST00000447578 OR1I1O60431 355 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 TBL1XO60907 577 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 B4GALT2O60909 372 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 NIPSNAP2O75323 286 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 CLDN11O75508 207 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 FGF4P08620 206 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 RPS17P08708 135 aaKnown RBP3.42□□□□□ -1.86
VPS29-202ENST00000447578 GNB3P16520 340 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 NT5EP21589 574 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 CSKP41240 450 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 MAGEA5P43359 124 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 PSMD8P48556 350 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 CEBPDP49716 269 aaPredicted RBP3.42□□□□□ -1.86
VPS29-202ENST00000447578 CCL23P55773 120 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 ATP5IP56385 69 aaPredicted RBP3.42□□□□□ -1.86
VPS29-202ENST00000447578 RHOAP61586 193 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 IRX1P78414 480 aaPredicted RBP3.42□□□□□ -1.86
VPS29-202ENST00000447578 CYCSP99999 105 aaKnown RBP3.42□□□□□ -1.86
VPS29-202ENST00000447578 MRPL28Q13084 256 aaKnown RBP3.42□□□□□ -1.86
VPS29-202ENST00000447578 KIAA0141Q14154 515 aaPredicted RBP3.42□□□□□ -1.86
VPS29-202ENST00000447578 CAPRIN1Q14444 709 aaKnown RBP3.42□□□□□ -1.86
VPS29-202ENST00000447578 GRB7Q14451 532 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 SYPL1Q16563 259 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 EXOC3L2Q2M3D2 409 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 CNPY1Q3B7I2 92 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 CTSL3PQ5NE16 218 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 SAMD4BQ5PRF9 694 aaKnown RBP3.42□□□□□ -1.86
VPS29-202ENST00000447578 C6orf52Q5T4I8 152 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 AGAP7PQ5VUJ5 663 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 TMEM225Q6GV28 225 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 PYHIN1Q6K0P9 492 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 UGT2A3Q6UWM9 527 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 HACD2Q6Y1H2 254 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 C3P1Q6ZMU1 363 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 FRRS1Q6ZNA5 592 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 ZNF497Q6ZNH5 498 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 Q6ZRP5 223 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 TSEN54Q7Z6J9 526 aaKnown RBP3.42□□□□□ -1.86
VPS29-202ENST00000447578 ARPINQ7Z6K5 226 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 DEFB128Q7Z7B8 93 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 PARGQ86W56 976 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 DHFR2Q86XF0 187 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 FUNDC1Q8IVP5 155 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 CPNE9Q8IYJ1 553 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 LRRC43Q8N309 656 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 OR56A4Q8NGH8 313 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 RHEBL1Q8TAI7 183 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 SPPL2AQ8TCT8 520 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 TMEM190Q8WZ59 177 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 RPL3LQ92901 407 aaKnown RBP3.42□□□□□ -1.86
VPS29-202ENST00000447578 EMG1Q92979 244 aaKnown RBP3.42□□□□□ -1.86
VPS29-202ENST00000447578 TOP1MTQ969P6 601 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 ADIPOR1Q96A54 375 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 SLC41A3Q96GZ6 507 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 TPD52L3Q96J77 140 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 SLC45A3Q96JT2 553 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 RCHY1Q96PM5 261 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 F2RL3Q96RI0 385 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 SLC39A3Q9BRY0 314 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 CABLES2Q9BTV7 478 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 TRIM15Q9C019 465 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 TRIM4Q9C037 500 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 DERL2Q9GZP9 239 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 TUBB1Q9H4B7 451 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 CWH43Q9H720 699 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 APMAPQ9HDC9 416 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 GID8Q9NWU2 228 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 CD274Q9NZQ7 290 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 TMEM181Q9P2C4 612 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 GALPQ9UBC7 116 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 CD300AQ9UGN4 299 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 RAB26Q9ULW5 256 aa3.42□□□□□ -1.86
VPS29-202ENST00000447578 MRPS28Q9Y2Q9 187 aaKnown RBP3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms