RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 OR8G3PP0DMU2 310 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 SELENOVP59797 346 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 ERVS71-1P61550 626 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 MYBPC1Q00872 1141 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 GLO1Q04760 184 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 NFYCQ13952 458 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 FXNQ16595 210 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 DUSP7Q16829 419 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 RUNDC3AQ59EK9 446 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 BEND6Q5SZJ8 279 aaPredicted RBP12.45□□□□□ -0.42
SDC1-204ENST00000429035 ZNF627Q7L945 461 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 PIWIL3Q7Z3Z3 882 aaKnown RBP12.45□□□□□ -0.42
SDC1-204ENST00000429035 PTOV1Q86YD1 416 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 RBM45Q8IUH3 476 aaKnown RBP12.45□□□□□ -0.42
SDC1-204ENST00000429035 ZNF584Q8IVC4 421 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.45□□□□□ -0.42
SDC1-204ENST00000429035 SLC30A7Q8NEW0 376 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 OR4K5Q8NGD3 323 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 OR6X1Q8NH79 312 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 ADAMTS16Q8TE57 1224 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 TMEM54Q969K7 222 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 DENND2DQ9H6A0 471 aaPredicted RBP12.45□□□□□ -0.42
SDC1-204ENST00000429035 SLC52A3Q9NQ40 469 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 TMEM38BQ9NVV0 291 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 HIF1ANQ9NWT6 349 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 TREM2Q9NZC2 230 aa12.45□□□□□ -0.42
SDC1-204ENST00000429035 TRAPPC13A5PLN9 417 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 WNT9BO14905 357 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 DHHO43323 396 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 FMO6PO60774 539 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 BCL10O95999 233 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 CLPTM1O96005 669 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 IGHG1P01857 330 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 TFP02787 698 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 SERPINA5P05154 406 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 MSMBP08118 114 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 VIMP08670 466 aaKnown RBP12.44□□□□□ -0.42
SDC1-204ENST00000429035 QDPRP09417 244 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 CD247P20963 164 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 MAGEB1P43366 347 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 KLF3P57682 345 aaPredicted RBP12.44□□□□□ -0.42
SDC1-204ENST00000429035 PCBP3P57721 371 aaKnown RBP12.44□□□□□ -0.42
SDC1-204ENST00000429035 TBC1D28Q2M2D7 210 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 AVPI1Q5T686 147 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 TMEM154Q6P9G4 183 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 DLEU7Q6UYE1 221 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 C12orf54Q6X4T0 127 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 SLC16A14Q7RTX9 510 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 PAQR4Q8N4S7 273 aaPredicted RBP12.44□□□□□ -0.42
SDC1-204ENST00000429035 LRRC17Q8N6Y2 441 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 NOXO1Q8NFA2 376 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 OR4D11Q8NGI4 311 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 OR51F2Q8NH61 342 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 TMEM186Q96B77 213 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 SLC25A44Q96H78 314 aaPredicted RBP12.44□□□□□ -0.42
SDC1-204ENST00000429035 LRRC37BQ96QE4 947 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 TSPAN32Q96QS1 320 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 CGREF1Q99674 301 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 ZNF416Q9BWM5 594 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 RABEP2Q9H5N1 569 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 NDUFAF1Q9Y375 327 aa12.44□□□□□ -0.42
SDC1-204ENST00000429035 BLOC1S5-TXNDC5H3BN57 136 aa12.43□□□□□ -0.42
SDC1-204ENST00000429035 THY1P04216 161 aa12.43□□□□□ -0.42
SDC1-204ENST00000429035 PGA4P0DJD7 388 aa12.43□□□□□ -0.42
SDC1-204ENST00000429035 PGA3P0DJD8 388 aa12.43□□□□□ -0.42
SDC1-204ENST00000429035 GAAP10253 952 aa12.43□□□□□ -0.42
SDC1-204ENST00000429035 CCNOP22674 350 aa12.43□□□□□ -0.42
SDC1-204ENST00000429035 PCGF2P35227 344 aa12.43□□□□□ -0.42
SDC1-204ENST00000429035 ZNF84P51523 738 aa12.43□□□□□ -0.42
SDC1-204ENST00000429035 ACTG1P63261 375 aa12.43□□□□□ -0.42
SDC1-204ENST00000429035 MVKQ03426 396 aa12.43□□□□□ -0.42
SDC1-204ENST00000429035 HSF2Q03933 536 aa12.43□□□□□ -0.42
SDC1-204ENST00000429035 SLC36A2Q495M3 483 aa12.43□□□□□ -0.42
SDC1-204ENST00000429035 NHLRC1Q6VVB1 395 aa12.43□□□□□ -0.42
SDC1-204ENST00000429035 ZNF771Q7L3S4 317 aaPredicted RBP12.43□□□□□ -0.42
SDC1-204ENST00000429035 PATL1Q86TB9 770 aaKnown RBP12.43□□□□□ -0.42
SDC1-204ENST00000429035 LRRC18Q8N456 261 aa12.43□□□□□ -0.42
SDC1-204ENST00000429035 RBM15BQ8NDT2 890 aaKnown RBP12.43□□□□□ -0.42
SDC1-204ENST00000429035 OR10A6Q8NH74 314 aa12.43□□□□□ -0.42
SDC1-204ENST00000429035 ZNF347Q96SE7 839 aa12.43□□□□□ -0.42
SDC1-204ENST00000429035 TAS2R5Q9NYW4 299 aa12.43□□□□□ -0.42
SDC1-204ENST00000429035 GPR160Q9UJ42 338 aa12.43□□□□□ -0.42
SDC1-204ENST00000429035 ZNF229Q9UJW7 825 aa12.43□□□□□ -0.42
SDC1-204ENST00000429035 GMEB1Q9Y692 573 aa12.43□□□□□ -0.42
SDC1-204ENST00000429035 WNK2Q9Y3S1 2297 aa12.42□□□□□ -0.42
SDC1-204ENST00000429035 IQCMA0A1B0GVH7 501 aa12.42□□□□□ -0.42
SDC1-204ENST00000429035 A0A1W2PRG6 482 aa12.42□□□□□ -0.42
SDC1-204ENST00000429035 SLC22A23A1A5C7 686 aa12.42□□□□□ -0.42
SDC1-204ENST00000429035 F13BP05160 661 aa12.42□□□□□ -0.42
SDC1-204ENST00000429035 DRD4P21917 467 aa12.42□□□□□ -0.42
SDC1-204ENST00000429035 APLNRP35414 380 aa12.42□□□□□ -0.42
SDC1-204ENST00000429035 CCL8P80075 99 aa12.42□□□□□ -0.42
SDC1-204ENST00000429035 PLP2Q04941 152 aa12.42□□□□□ -0.42
SDC1-204ENST00000429035 ZP4Q12836 540 aa12.42□□□□□ -0.42
SDC1-204ENST00000429035 INTS11Q5TA45 600 aaKnown RBP12.42□□□□□ -0.42
SDC1-204ENST00000429035 DEF8Q6ZN54 512 aa12.42□□□□□ -0.42
SDC1-204ENST00000429035 RETREG3Q86VR2 466 aa12.42□□□□□ -0.42
SDC1-204ENST00000429035 TSPYL5Q86VY4 417 aaPredicted RBP12.42□□□□□ -0.42
SDC1-204ENST00000429035 MEX3DQ86XN8 651 aaKnown RBP12.42□□□□□ -0.42
SDC1-204ENST00000429035 SLC30A8Q8IWU4 369 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms