RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 A0A1W2PR77 199 aa9.72□□□□□ -0.85
TCOF1-204ENST00000427724 SPDEFO95238 335 aa9.72□□□□□ -0.85
TCOF1-204ENST00000427724 IFNA6P05013 189 aa9.72□□□□□ -0.85
TCOF1-204ENST00000427724 PVALBP20472 110 aaPredicted RBP9.72□□□□□ -0.85
TCOF1-204ENST00000427724 ADAM8P78325 824 aa9.72□□□□□ -0.85
TCOF1-204ENST00000427724 SMCO1Q147U7 214 aa9.72□□□□□ -0.85
TCOF1-204ENST00000427724 PDZD9Q8IXQ8 264 aa9.72□□□□□ -0.85
TCOF1-204ENST00000427724 OR52I1Q8NGK6 324 aa9.72□□□□□ -0.85
TCOF1-204ENST00000427724 TMEM163Q8TC26 289 aa9.72□□□□□ -0.85
TCOF1-204ENST00000427724 SFXN5Q8TD22 340 aa9.72□□□□□ -0.85
TCOF1-204ENST00000427724 NEURL3Q96EH8 262 aa9.72□□□□□ -0.85
TCOF1-204ENST00000427724 ZNF582Q96NG8 517 aaPredicted RBP9.72□□□□□ -0.85
TCOF1-204ENST00000427724 ALG8Q9BVK2 526 aa9.72□□□□□ -0.85
TCOF1-204ENST00000427724 ZNF768Q9H5H4 540 aaKnown RBP9.72□□□□□ -0.85
TCOF1-204ENST00000427724 SLC22A20A6NK97 555 aa9.72□□□□□ -0.85
TCOF1-204ENST00000427724 ZNF879B4DU55 563 aa9.72□□□□□ -0.85
TCOF1-204ENST00000427724 SLC16A7O60669 478 aa9.72□□□□□ -0.85
TCOF1-204ENST00000427724 RGS9O75916 674 aaPredicted RBP9.72□□□□□ -0.85
TCOF1-204ENST00000427724 TRAPPC2P0DI81 140 aa9.72□□□□□ -0.85
TCOF1-204ENST00000427724 TRAPPC2BP0DI82 140 aa9.72□□□□□ -0.85
TCOF1-204ENST00000427724 ACP2P11117 423 aa9.72□□□□□ -0.85
TCOF1-204ENST00000427724 DAP3P51398 398 aaKnown RBP9.72□□□□□ -0.85
TCOF1-204ENST00000427724 ENTPD8Q5MY95 495 aa9.72□□□□□ -0.85
TCOF1-204ENST00000427724 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.72□□□□□ -0.85
TCOF1-204ENST00000427724 RBPMSQ93062 196 aaKnown RBP9.72□□□□□ -0.85
TCOF1-204ENST00000427724 MNTQ99583 582 aa9.72□□□□□ -0.85
TCOF1-204ENST00000427724 THAP7Q9BT49 309 aaPredicted RBP9.72□□□□□ -0.85
TCOF1-204ENST00000427724 LHX6Q9UPM6 363 aa9.72□□□□□ -0.85
TCOF1-204ENST00000427724 KCNE1BA0A087WTH5 132 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 OR5H15A6NDH6 313 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 PRR19A6NJB7 356 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 ZAR1LA6NP61 321 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 KDM4EB2RXH2 506 aaPredicted RBP9.71□□□□□ -0.85
TCOF1-204ENST00000427724 EIF1BO60739 113 aaKnown RBP9.71□□□□□ -0.85
TCOF1-204ENST00000427724 IGHG1P01857 330 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 M6PRP20645 277 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 POLR2HP52434 150 aaKnown RBP9.71□□□□□ -0.85
TCOF1-204ENST00000427724 MC2RQ01718 297 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 SAXO2Q658L1 398 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 PM20D2Q8IYS1 436 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 ACOT11Q8WXI4 607 aaPredicted RBP9.71□□□□□ -0.85
TCOF1-204ENST00000427724 ST8SIA4Q92187 359 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 OR2A5Q96R48 311 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 UQCC2Q9BRT2 126 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 SLC23A1Q9UHI7 598 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 SONP18583 2426 aaKnown RBP9.71□□□□□ -0.85
TCOF1-204ENST00000427724 PIKFYVEQ9Y2I7 2098 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 LRRN3E7EW58 273 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 PRAMEF4O60810 478 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 APOC1P02654 83 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 TFP02787 698 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 ETV1P50549 477 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 IDH3GP51553 393 aaPredicted RBP9.71□□□□□ -0.85
TCOF1-204ENST00000427724 ARHGDIBP52566 201 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 PSPHP78330 225 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 OR1Q1Q15612 314 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 PRAMEF9Q5VWM5 478 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 ACSM5Q6NUN0 579 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 CARFQ8N187 725 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 ANKRD53Q8N9V6 530 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 ZNF680Q8NEM1 530 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 APH1BQ8WW43 257 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 ZNF285Q96NJ3 590 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 OPALINQ96PE5 141 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 CDCA4Q9BXL8 241 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 METTL17Q9H7H0 456 aaPredicted RBP9.71□□□□□ -0.85
TCOF1-204ENST00000427724 MED20Q9H944 212 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 CDH10Q9Y6N8 788 aa9.71□□□□□ -0.85
TCOF1-204ENST00000427724 BRCA1P38398 1863 aaKnown RBP9.71□□□□□ -0.86
TCOF1-204ENST00000427724 TRAV27A0A087WT01 109 aa9.71□□□□□ -0.86
TCOF1-204ENST00000427724 TRBV2A0A0J9YWF9 115 aa9.71□□□□□ -0.86
TCOF1-204ENST00000427724 TVP23AA6NH52 213 aa9.71□□□□□ -0.86
TCOF1-204ENST00000427724 SLC22A31A6NKX4 558 aa9.71□□□□□ -0.86
TCOF1-204ENST00000427724 OR2AT4A6NND4 320 aa9.71□□□□□ -0.86
TCOF1-204ENST00000427724 AKR7A3O95154 331 aa9.71□□□□□ -0.86
TCOF1-204ENST00000427724 ETV5P41161 510 aa9.71□□□□□ -0.86
TCOF1-204ENST00000427724 BORCS8Q96FH0 119 aa9.71□□□□□ -0.86
TCOF1-204ENST00000427724 ZNF471Q9BX82 626 aaPredicted RBP9.71□□□□□ -0.86
TCOF1-204ENST00000427724 ZNF443Q9Y2A4 671 aaPredicted RBP9.71□□□□□ -0.86
TCOF1-204ENST00000427724 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.71□□□□□ -0.866e-7■■■■□ 23.4
TCOF1-204ENST00000427724 GABRPO00591 440 aa9.7□□□□□ -0.86
TCOF1-204ENST00000427724 PDCD5O14737 125 aa9.7□□□□□ -0.86
TCOF1-204ENST00000427724 CASC3O15234 703 aaKnown RBP9.7□□□□□ -0.86
TCOF1-204ENST00000427724 B3GALNT1O75752 331 aa9.7□□□□□ -0.86
TCOF1-204ENST00000427724 CBR3O75828 277 aa9.7□□□□□ -0.86
TCOF1-204ENST00000427724 PRPH2P23942 346 aa9.7□□□□□ -0.86
TCOF1-204ENST00000427724 KIR2DL3P43628 341 aa9.7□□□□□ -0.86
TCOF1-204ENST00000427724 GRK1Q15835 563 aa9.7□□□□□ -0.86
TCOF1-204ENST00000427724 SYT14P1Q58G82 188 aa9.7□□□□□ -0.86
TCOF1-204ENST00000427724 ZNF627Q7L945 461 aa9.7□□□□□ -0.86
TCOF1-204ENST00000427724 OR7G2Q8NG99 324 aa9.7□□□□□ -0.86
TCOF1-204ENST00000427724 CNOT9Q92600 299 aaKnown RBP9.7□□□□□ -0.86
TCOF1-204ENST00000427724 ZNF416Q9BWM5 594 aa9.7□□□□□ -0.86
TCOF1-204ENST00000427724 SH2B3Q9UQQ2 575 aa9.7□□□□□ -0.86
TCOF1-204ENST00000427724 CACNG2Q9Y698 323 aa9.7□□□□□ -0.86
TCOF1-204ENST00000427724 MED13LQ71F56 2210 aa9.7□□□□□ -0.86
TCOF1-204ENST00000427724 IGLV3-16A0A075B6K0 115 aa9.7□□□□□ -0.86
TCOF1-204ENST00000427724 KANTRA0A1W2PQU2 76 aa9.7□□□□□ -0.86
TCOF1-204ENST00000427724 CRYAAP02489 173 aa9.7□□□□□ -0.86
TCOF1-204ENST00000427724 GRK5P34947 590 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms