RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 LRRC74BQ6ZQY2 392 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 C16orf62Q7Z3J2 963 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 MARCH3Q86UD3 253 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 PM20D2Q8IYS1 436 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 FADS6Q8N9I5 356 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 OR2M3Q8NG83 312 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 OR4K17Q8NGC6 315 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 OR9I1Q8NGQ6 314 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 OR5AK3PQ8NH89 298 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 SSC4DQ8WTU2 575 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 GTF2H4Q92759 462 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 RAB8BQ92930 207 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 ABTB1Q969K4 478 aaPredicted RBP2.21□□□□□ -2.06
VPS13A-208ENST00000423463 VPS33AQ96AX1 596 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 ROPN1LQ96C74 230 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 THOC1Q96FV9 657 aaKnown RBP2.21□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF317Q96PQ6 595 aaPredicted RBP2.21□□□□□ -2.06
VPS13A-208ENST00000423463 TRNT1Q96Q11 434 aaKnown RBP2.21□□□□□ -2.06
VPS13A-208ENST00000423463 C1QTNF4Q9BXJ3 329 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 NMUR2Q9GZQ4 415 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF385DQ9H6B1 395 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 MTHFD2LQ9H903 347 aaPredicted RBP2.21□□□□□ -2.06
VPS13A-208ENST00000423463 TPT1P8Q9HAU6 139 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 SLC52A3Q9NQ40 469 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 NKIRAS2Q9NYR9 191 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 CALML5Q9NZT1 146 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 CCDC167Q9P0B6 97 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 FBXL17Q9UF56 701 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 MEMO1Q9Y316 297 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 NDUFAF1Q9Y375 327 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 CROCCQ5TZA2 2017 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 MGAQ8IWI9 3026 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 C15orf38-AP3S2A0A0A6YYH1 394 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 GMNCA6NCL1 334 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 SERINC4A6NH21 518 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 EVPLLA8MZ36 301 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 HMGN4O00479 90 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 NR5A2O00482 541 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 ZZEF1O43149 2961 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 FCMRO60667 390 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 CCDC22O60826 627 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 NPPAP01160 153 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 NR2F1P10589 423 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 IL7RP16871 459 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 GPX2P18283 190 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 DCTP40126 519 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 EIF1P41567 113 aaKnown RBP2.2□□□□□ -2.06
VPS13A-208ENST00000423463 CDKN2CP42773 168 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 P2RX1P51575 399 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 SEC61A1P61619 476 aaKnown RBP2.2□□□□□ -2.06
VPS13A-208ENST00000423463 FADDQ13158 208 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 ESPL1Q14674 2120 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 RGNQ15493 299 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 MAPRE2Q15555 327 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 ZSWIM7Q19AV6 140 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 CDONQ4KMG0 1287 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 EIPR1Q53HC9 387 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 COQ5Q5HYK3 327 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 CCNJQ5T5M9 372 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 PRAMEF8Q5VWM4 474 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 PRAMEF7Q5VXH5 474 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 OR5M10Q6IEU7 315 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 TNFAIP8L2Q6P589 184 aaPredicted RBP2.2□□□□□ -2.06
VPS13A-208ENST00000423463 CFAP77Q6ZQR2 320 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 YRDCQ86U90 279 aaKnown RBP2.2□□□□□ -2.06
VPS13A-208ENST00000423463 HAPLN4Q86UW8 402 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 RNF130Q86XS8 419 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 FOXRED2Q8IWF2 684 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 OR8H2Q8N162 312 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 CLEC4FQ8N1N0 589 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF619Q8N2I2 560 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 LSMEM1Q8N8F7 131 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF114Q8NC26 417 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 FAM83FQ8NEG4 500 aaPredicted RBP2.2□□□□□ -2.06
VPS13A-208ENST00000423463 OR2AK2Q8NG84 335 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 OR5D16Q8NGK9 328 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 OR14L1PQ8NHC6 308 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 FBXO30Q8TB52 745 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 ZPLD1Q8TCW7 415 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 ARSGQ96EG1 525 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 RRNAD1Q96FB5 475 aaKnown RBP2.2□□□□□ -2.06
VPS13A-208ENST00000423463 OTUB1Q96FW1 271 aaPredicted RBP2.2□□□□□ -2.06
VPS13A-208ENST00000423463 SFXN2Q96NB2 322 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF570Q96NI8 536 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 UGT2B28Q9BY64 529 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 RTN4RQ9BZR6 473 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF350Q9GZX5 532 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 LAT2Q9GZY6 243 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 NSRP1Q9H0G5 558 aaKnown RBP2.2□□□□□ -2.06
VPS13A-208ENST00000423463 FLRT3Q9NZU0 649 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 MED11Q9P086 117 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 LEF1Q9UJU2 399 aaPredicted RBP2.2□□□□□ -2.06
VPS13A-208ENST00000423463 DKKL1Q9UK85 242 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 SLC6A5Q9Y345 797 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 WDR45Q9Y484 360 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 LIPGQ9Y5X9 500 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 ITPR1Q14643 2758 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 POLEQ07864 2286 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 SHANK1Q9Y566 2161 aa2.2□□□□□ -2.06
VPS13A-208ENST00000423463 A0A0G2JPF8 293 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms