RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 CORINQ9Y5Q5 1042 aa6.9□□□□□ -1.3
VIM-202ENST00000421459 IGHV1-69-2A0A0G2JMI3 117 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 CPSF4LA6NMK7 179 aaKnown RBP6.89□□□□□ -1.31
VIM-202ENST00000421459 TRIM77I1YAP6 450 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 KPNA4O00629 521 aaPredicted RBP6.89□□□□□ -1.31
VIM-202ENST00000421459 SPRY3O43610 288 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 IGHV2-5P01817 119 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 QDPRP09417 244 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 OR8G3PP0DMU2 310 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 ZNF250P15622 560 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 MPV17P39210 176 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 CRYBB2P43320 205 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 UCP2P55851 309 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 KLF3P57682 345 aaPredicted RBP6.89□□□□□ -1.31
VIM-202ENST00000421459 NCALDP61601 193 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 RPS23P62266 143 aaKnown RBP6.89□□□□□ -1.31
VIM-202ENST00000421459 LCN2P80188 198 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 RBBP4Q09028 425 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 FADDQ13158 208 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 SCARB2Q14108 478 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 DUSP7Q16829 419 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 FAM91A1Q658Y4 838 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 REEP3Q6NUK4 255 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 TMEM154Q6P9G4 183 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 C5orf46Q6UWT4 87 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 LINC00114Q6XXX2 140 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 MSANTD1Q6ZTZ1 278 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 USP51Q70EK9 711 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 USP43Q70EL4 1123 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 PIWIL3Q7Z3Z3 882 aaKnown RBP6.89□□□□□ -1.31
VIM-202ENST00000421459 C1QL2Q7Z5L3 287 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 KIRREL3Q8IZU9 778 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 LRRC18Q8N456 261 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 GOLGA6L1Q8N7Z2 621 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 SCAIQ8N9R8 606 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 GPR32P1Q8NGA4 272 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 OR5J2Q8NH18 312 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 OR6S1Q8NH40 331 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 SGMS2Q8NHU3 365 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 VANGL1Q8TAA9 524 aaPredicted RBP6.89□□□□□ -1.31
VIM-202ENST00000421459 SLC35B4Q969S0 331 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 ZNF347Q96SE7 839 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 EPYCQ99645 322 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 MCHR1Q99705 422 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 EBF4Q9BQW3 602 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 ZNF416Q9BWM5 594 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 ZNF385DQ9H6B1 395 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 CDH20Q9HBT6 801 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 TMEM38BQ9NVV0 291 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 DCAF16Q9NXF7 216 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 SELENONQ9NZV5 590 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 CCDC167Q9P0B6 97 aa6.89□□□□□ -1.31
VIM-202ENST00000421459 SOX21Q9Y651 276 aaPredicted RBP6.89□□□□□ -1.31
VIM-202ENST00000421459 IGLV3-9A0A075B6K5 115 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 TRBV5-3A0A0A0MS03 114 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 IGKV1D-43A0A0B4J1Z2 117 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 TMPRSS2O15393 492 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 DHHO43323 396 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 TPD52L2O43399 206 aaKnown RBP6.88□□□□□ -1.31
VIM-202ENST00000421459 RNF13O43567 381 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 MFN2O95140 757 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 OR6A2O95222 327 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 PGA4P0DJD7 388 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 PGA3P0DJD8 388 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 CCNOP22674 350 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 ZFP36P26651 326 aaKnown RBP6.88□□□□□ -1.31
VIM-202ENST00000421459 CDAP32320 146 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 LSP1P33241 339 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 WNT5AP41221 380 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 RAD52P43351 418 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 UBA52P62987 128 aaKnown RBP6.88□□□□□ -1.31
VIM-202ENST00000421459 MRPS11P82912 194 aaKnown RBP6.88□□□□□ -1.31
VIM-202ENST00000421459 ZP4Q12836 540 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 SELPLGQ14242 412 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 ZNF74Q16587 644 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 ENTPD8Q5MY95 495 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 THEM4Q5T1C6 240 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 LRIF1Q5T3J3 769 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 DCAF12L2Q5VW00 463 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 REP15Q6BDI9 236 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 BLOC1S3Q6QNY0 202 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 EPGNQ6UW88 154 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 SLC16A14Q7RTX9 510 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 JAZF1Q86VZ6 243 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 KRT73Q86Y46 540 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 ARMC8Q8IUR7 673 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 BCL6BQ8N143 479 aaPredicted RBP6.88□□□□□ -1.31
VIM-202ENST00000421459 SIGLECL1Q8N7X8 197 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 SYT14Q8NB59 555 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 CPEB3Q8NE35 698 aaKnown RBP6.88□□□□□ -1.31
VIM-202ENST00000421459 BHLHE22Q8NFJ8 381 aaPredicted RBP6.88□□□□□ -1.31
VIM-202ENST00000421459 OR6T1Q8NGN1 323 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 OR1J1Q8NGS3 322 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 OR6X1Q8NH79 312 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 CCL17Q92583 94 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 MCHR2Q969V1 340 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 ZNF566Q969W8 418 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 ARHGDIGQ99819 225 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 TMEM43Q9BTV4 400 aa6.88□□□□□ -1.31
VIM-202ENST00000421459 RBM4Q9BWF3 364 aaKnown RBP6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms