RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 COPS7AQ9UBW8 275 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 SPATA2Q9UM82 520 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 CAMK2AQ9UQM7 478 aa13.38□□□□□ -0.27
USP4-203ENST00000415188 FLNBO75369 2602 aaKnown RBP13.38□□□□□ -0.27
USP4-203ENST00000415188 TRAV36DV7A0A075B6V5 113 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 A0A0B4J293 547 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 A0A1B0GX78 115 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 BLOC1S5-TXNDC5H3BN57 136 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 GSTZ1O43708 216 aaPredicted RBP13.37□□□□□ -0.27
USP4-203ENST00000415188 ICOSLGO75144 302 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 ITGA10O75578 1167 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 MT-ATP6P00846 226 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 FGF5P12034 268 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 AHCYP23526 432 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 MAPK3P27361 379 aaPredicted RBP13.37□□□□□ -0.27
USP4-203ENST00000415188 TACR3P29371 465 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 SLC6A1P30531 599 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 DLSTP36957 453 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 OR1D4P47884 311 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 CENPAP49450 140 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 MMP15P51511 669 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 HCCSP53701 268 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 PNLIPRP2P54317 469 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 GPR176Q14439 515 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 IL11RAQ14626 422 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 DEFB109BQ30KR1 87 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 SLC25A35Q3KQZ1 300 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 CEP78Q5JTW2 689 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 UBE2NLQ5JXB2 153 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 C5orf46Q6UWT4 87 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 APOOLQ6UXV4 268 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 SLC29A4Q7RTT9 530 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 ZNF321PQ8N8H1 164 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 OR51L1Q8NGJ5 315 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 CAPSLQ8WWF8 208 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 THRSPQ92748 146 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 MOGAT1Q96PD6 335 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 ADOQ96SZ5 270 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 LPAR4Q99677 370 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 MARCH7Q9H992 704 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 COPZ2Q9P299 210 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 NLKQ9UBE8 527 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 GRHPRQ9UBQ7 328 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 NUFIP1Q9UHK0 495 aaKnown RBP13.37□□□□□ -0.27
USP4-203ENST00000415188 ALG5Q9Y673 324 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 CACNG2Q9Y698 323 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 TMEM14AQ9Y6G1 99 aa13.37□□□□□ -0.27
USP4-203ENST00000415188 A8MUA0 341 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 INMT-MINDY4F8WBC2 141 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 BGLAPP02818 100 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 GP1BBP13224 206 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 ATF1P18846 271 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 TCN2P20062 427 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 MST1P26927 711 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 NKX2-5P52952 324 aaPredicted RBP13.36□□□□□ -0.27
USP4-203ENST00000415188 MRPS15P82914 257 aaKnown RBP13.36□□□□□ -0.27
USP4-203ENST00000415188 IFITM2Q01629 132 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 ZNF117Q03924 483 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 EGR4Q05215 589 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 RPL18Q07020 188 aaKnown RBP13.36□□□□□ -0.27
USP4-203ENST00000415188 PLCXD2Q0VAA5 305 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 CBLN3Q6UW01 205 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 IL20RBQ6UXL0 311 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 CDH24Q86UP0 819 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 NOXA1Q86UR1 476 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 PPP1R3BQ86XI6 285 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 CDC20BQ86Y33 519 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 MISPQ8IVT2 679 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 ZNF441Q8N8Z8 693 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 PLPP5Q8NEB5 264 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 OR1N1Q8NGS0 311 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 OR13C5Q8NGS8 318 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 ZPLD1Q8TCW7 415 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 UBASH3BQ8TF42 649 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 CLIP3Q96DZ5 547 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 KLHL15Q96M94 604 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 GAL3ST4Q96RP7 486 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 WWTR1Q9GZV5 400 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 TP63Q9H3D4 680 aaPredicted RBP13.36□□□□□ -0.27
USP4-203ENST00000415188 NIPAL2Q9H841 368 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 ZNF275Q9NSD4 429 aaPredicted RBP13.36□□□□□ -0.27
USP4-203ENST00000415188 SRPK3Q9UPE1 567 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 SETXQ7Z333 2677 aaKnown RBP13.36□□□□□ -0.27
USP4-203ENST00000415188 ASH1LQ9NR48 2969 aaKnown RBP13.36□□□□□ -0.27
USP4-203ENST00000415188 TERTO14746 1132 aaKnown RBP13.36□□□□□ -0.27
USP4-203ENST00000415188 NDUFB5O43674 189 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 TPPPO94811 219 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 WISP1O95388 367 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 CXCR1P25024 350 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 BLVRAP53004 296 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 LTBQ06643 244 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 EGR3Q06889 387 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 MADCAM1Q13477 382 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 GXYLT1Q4G148 440 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 PLA1AQ53H76 456 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 PWWP2BQ6NUJ5 590 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 TMEM53Q6P2H8 277 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 MAMDC2Q7Z304 686 aaPredicted RBP13.36□□□□□ -0.27
USP4-203ENST00000415188 C9orf40Q8IXQ3 194 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 TIGD4Q8IY51 512 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms