RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 TRAV1-2A0A0B4J238 106 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 LIMS3P0CW19 117 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 LIMS4P0CW20 117 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 FUT1P19526 365 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 NKX2-1P43699 371 aaPredicted RBP11.95□□□□□ -0.5
COL6A3-206ENST00000409809 NPY5RQ15761 445 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 OR10D4PQ8NGN7 298 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 NEURL3Q96EH8 262 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 NKX2-4Q9H2Z4 354 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 MMP11P24347 488 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 CRMP1Q14194 572 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 ETV3LQ6ZN32 361 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 LRRTM1Q86UE6 522 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 DND1Q8IYX4 353 aaKnown RBP11.95□□□□□ -0.5
COL6A3-206ENST00000409809 CELF5Q8N6W0 485 aaKnown RBP11.95□□□□□ -0.5
COL6A3-206ENST00000409809 C8orf89P0DMQ9 161 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 OMGP23515 440 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 EMID1Q96A84 441 aaPredicted RBP11.95□□□□□ -0.5
COL6A3-206ENST00000409809 NEURL2Q9BR09 285 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 HERPUD2Q9BSE4 406 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 FBXO34Q9NWN3 711 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 CA14Q9ULX7 337 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 SCGB1C2P0DMR2 95 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 VGLL4Q14135 290 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 ARSIQ5FYB1 569 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 ZNF343Q6P1L6 599 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 LMO3Q8TAP4 145 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 NDFIP1Q9BT67 221 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 SUCNR1Q9BXA5 334 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 ACPTQ9BZG2 426 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 GOLT1BQ9Y3E0 138 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 ACOT8O14734 319 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 CTSOP43234 321 aaPredicted RBP11.95□□□□□ -0.5
COL6A3-206ENST00000409809 OR4A47Q6IF82 309 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 LYG2Q86SG7 212 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 OR4A4PQ8NGN8 299 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 ZNF98A6NK75 572 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 CHRNB4P30926 498 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 ZNF93P35789 620 aaPredicted RBP11.94□□□□□ -0.5
COL6A3-206ENST00000409809 AHRP35869 848 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 VWA2Q5GFL6 755 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 TMPRSS11FQ6ZWK6 438 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 SLC16A14Q7RTX9 510 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 CSNK1A1LQ8N752 337 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 OR51A4Q8NGJ6 313 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 PTGDR2Q9Y5Y4 395 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 APLNRP35414 380 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 RPS24P62847 133 aaKnown RBP11.94□□□□□ -0.5
COL6A3-206ENST00000409809 SLC35A1P78382 337 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 TSTD1Q8NFU3 115 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 OR5B3Q8NH48 314 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 HMGB4Q8WW32 186 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 C20orf24Q9BUV8 137 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 NPIPB15A6NHN6 443 aaPredicted RBP11.94□□□□□ -0.5
COL6A3-206ENST00000409809 CST4P01036 141 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 NQO2P16083 231 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 IL3RAP26951 378 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 BSGP35613 385 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 KRTDAPP60985 99 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 OR52W1Q6IF63 320 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 SGPP1Q9BX95 441 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 LHX6Q9UPM6 363 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 OR5H15A6NDH6 313 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 OR5H1A6NKK0 313 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 LGI1O95970 557 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 SNRPBP14678 240 aaKnown RBP11.94□□□□□ -0.5
COL6A3-206ENST00000409809 LIPAP38571 399 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 UBE2NP61088 152 aaKnown RBP11.94□□□□□ -0.5
COL6A3-206ENST00000409809 FOXK1P85037 733 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 ZNF684Q5T5D7 378 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 FAM26EQ8N5C1 309 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 FAM71CQ8NEG0 241 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 CPPED1Q9BRF8 314 aaPredicted RBP11.94□□□□□ -0.5
COL6A3-206ENST00000409809 GPR55Q9Y2T6 319 aaPredicted RBP11.94□□□□□ -0.5
COL6A3-206ENST00000409809 B4GALT2O60909 372 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 SP3Q02447 781 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 KLHDC8AQ8IYD2 350 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 OR2D3Q8NGH3 330 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 OR1F2PQ96R84 312 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 ZNF552Q9H707 407 aaPredicted RBP11.94□□□□□ -0.5
COL6A3-206ENST00000409809 HAO2Q9NYQ3 351 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 ENTPD2Q9Y5L3 495 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 TRAPPC1Q9Y5R8 145 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 SNX11Q9Y5W9 270 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 SLC31A2O15432 143 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 ZNF787Q6DD87 383 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 PXYLP1Q8TE99 480 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 APH1AQ96BI3 265 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 CAPNS2Q96L46 248 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 PITPNC1Q9UKF7 332 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 PHF1O43189 567 aaPredicted RBP11.94□□□□□ -0.5
COL6A3-206ENST00000409809 LILRA2Q8N149 483 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 FAM173AQ9BQD7 235 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 CDH20Q9HBT6 801 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 CORINQ9Y5Q5 1042 aa11.94□□□□□ -0.5
COL6A3-206ENST00000409809 SLC2A1P11166 492 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 ZNF8P17098 575 aaPredicted RBP11.93□□□□□ -0.5
COL6A3-206ENST00000409809 MBTPS1Q14703 1052 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 TMED6Q8WW62 240 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 MAP3K3Q99759 626 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms