RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 ZNF43P17038 809 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 CD97P48960 835 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 PPIAP62937 165 aaKnown RBP12.54□□□□□ -0.4
GPNMB-203ENST00000409458 ACSM1Q08AH1 577 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 TPBGQ13641 420 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 ESPNLQ6ZVH7 1005 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 TRILQ7L0X0 811 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 SLC16A9Q7RTY1 509 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 TMEM178AQ8NBL3 297 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 OR2V1Q8NHB1 315 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 CHCHD6Q9BRQ6 235 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 NAA11Q9BSU3 229 aaPredicted RBP12.54□□□□□ -0.4
GPNMB-203ENST00000409458 CENPOQ9BU64 300 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 MFRPQ9BY79 579 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 RNF167Q9H6Y7 350 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 WDR76Q9H967 626 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 MARCH7Q9H992 704 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 KLHDC2Q9Y2U9 406 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 CFAP47Q6ZTR5 3102 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 ALPK2Q86TB3 2170 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 LOC102725191A0A1B0GVB3 256 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 SLC35F4A4IF30 521 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 PRR32B1ATL7 298 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 SMAD9O15198 467 aaKnown RBP12.54□□□□□ -0.4
GPNMB-203ENST00000409458 MAGEB4O15481 346 aaPredicted RBP12.54□□□□□ -0.4
GPNMB-203ENST00000409458 DNPH1O43598 174 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 AKAP8O43823 692 aaKnown RBP12.54□□□□□ -0.4
GPNMB-203ENST00000409458 GPX5O75715 221 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 MT-ND5P03915 603 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 ENPP1P22413 925 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 CENPAP49450 140 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 LHX2P50458 406 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 AGFG1P52594 562 aaKnown RBP12.54□□□□□ -0.4
GPNMB-203ENST00000409458 OR12D2P58182 307 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 RAC3P60763 192 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 RPS25P62851 125 aaKnown RBP12.54□□□□□ -0.4
GPNMB-203ENST00000409458 POU4F3Q15319 338 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 CDONQ4KMG0 1287 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 TP53I3Q53FA7 332 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 OTPQ5XKR4 325 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 VASNQ6EMK4 673 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 NOXO1Q8NFA2 376 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 OR6N2Q8NGY6 317 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 OR10D3Q8NH80 312 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 TRMT61AQ96FX7 289 aaKnown RBP12.54□□□□□ -0.4
GPNMB-203ENST00000409458 INTS14Q96SY0 518 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 MRPL13Q9BYD1 178 aaKnown RBP12.54□□□□□ -0.4
GPNMB-203ENST00000409458 CCDC86Q9H6F5 360 aaKnown RBP12.54□□□□□ -0.4
GPNMB-203ENST00000409458 LIPGQ9Y5X9 500 aa12.54□□□□□ -0.4
GPNMB-203ENST00000409458 E9PI62 339 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 LINC01387J3KSC0 135 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 J3QLW9 94 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 CXCL13O43927 109 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 HLA-DQA2P01906 255 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 PGA4P0DJD7 388 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 PGA3P0DJD8 388 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 ZNF19P17023 458 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 CRABP1P29762 137 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 RPS27P42677 84 aaKnown RBP12.53□□□□□ -0.4
GPNMB-203ENST00000409458 CRYBB2P43320 205 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 EIF1AXP47813 144 aaKnown RBP12.53□□□□□ -0.4
GPNMB-203ENST00000409458 CARD18P57730 90 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 ACTA2P62736 377 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 ACTG2P63267 376 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 BDH1Q02338 343 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 LSAMPQ13449 338 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 CAMK2DQ13557 499 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 RNFT1Q5M7Z0 435 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 CARD17Q5XLA6 110 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 ASB18Q6ZVZ8 466 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 SLC22A16Q86VW1 577 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 CDC20BQ86Y33 519 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 OR6X1Q8NH79 312 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 SNIP1Q8TAD8 396 aaKnown RBP12.53□□□□□ -0.4
GPNMB-203ENST00000409458 ZHX1-C8orf76Q96EF9 292 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 MRPL22Q9NWU5 206 aaKnown RBP12.53□□□□□ -0.4
GPNMB-203ENST00000409458 BABAM2Q9NXR7 383 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 STUB1Q9UNE7 303 aa12.53□□□□□ -0.4
GPNMB-203ENST00000409458 COA3Q9Y2R0 106 aaPredicted RBP12.53□□□□□ -0.4
GPNMB-203ENST00000409458 SF3B6Q9Y3B4 125 aaKnown RBP12.53□□□□□ -0.4
GPNMB-203ENST00000409458 SIRT4Q9Y6E7 314 aaPredicted RBP12.53□□□□□ -0.4
GPNMB-203ENST00000409458 FRYQ5TBA9 3013 aa12.52□□□□□ -0.4
GPNMB-203ENST00000409458 ZNF670-ZNF695F2Z2N8 137 aa12.52□□□□□ -0.4
GPNMB-203ENST00000409458 AHCYL1O43865 530 aa12.52□□□□□ -0.4
GPNMB-203ENST00000409458 IGHG1P01857 330 aa12.52□□□□□ -0.4
GPNMB-203ENST00000409458 ITGB2P05107 769 aa12.52□□□□□ -0.4
GPNMB-203ENST00000409458 PAX7P23759 505 aa12.52□□□□□ -0.4
GPNMB-203ENST00000409458 PTGS2P35354 604 aa12.52□□□□□ -0.4
GPNMB-203ENST00000409458 CLDN17P56750 224 aa12.52□□□□□ -0.4
GPNMB-203ENST00000409458 CLDN18P56856 261 aa12.52□□□□□ -0.4
GPNMB-203ENST00000409458 CLRN1P58418 232 aa12.52□□□□□ -0.4
GPNMB-203ENST00000409458 PMP22Q01453 160 aa12.52□□□□□ -0.4
GPNMB-203ENST00000409458 SLC17A1Q14916 467 aa12.52□□□□□ -0.4
GPNMB-203ENST00000409458 TIMM50Q3ZCQ8 353 aa12.52□□□□□ -0.4
GPNMB-203ENST00000409458 DNM1P34Q6PK57 102 aa12.52□□□□□ -0.4
GPNMB-203ENST00000409458 CREB3L2Q70SY1 520 aa12.52□□□□□ -0.4
GPNMB-203ENST00000409458 VASH1Q7L8A9 365 aaPredicted RBP12.52□□□□□ -0.4
GPNMB-203ENST00000409458 HDDC2Q7Z4H3 204 aa12.52□□□□□ -0.4
GPNMB-203ENST00000409458 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.52□□□□□ -0.4
GPNMB-203ENST00000409458 FAM109AQ8N4B1 249 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms