RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 EEF1A1P68104 462 aaKnown RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 PITX1P78337 314 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 AKR1C1Q04828 323 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 EEF1A2Q05639 463 aaKnown RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 BAXQ07812 192 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 HABP2Q14520 560 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 LYSMD4Q5XG99 296 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 VASNQ6EMK4 673 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 Q6ZSR6 202 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 MOB1BQ7L9L4 216 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 SIAH3Q8IW03 269 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 CDH26Q8IXH8 852 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 DMBX1Q8NFW5 382 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 VN1R2Q8NFZ6 395 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 OR52H1Q8NGJ2 320 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 OR2A12Q8NGT7 310 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 FAM213BQ8TBF2 198 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 MAP3K3Q99759 626 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 NDFIP1Q9BT67 221 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 OSGIN1Q9UJX0 560 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 ZNF223Q9UK11 482 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 GJD2Q9UKL4 321 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 ACAD8Q9UKU7 415 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 COPS3Q9UNS2 423 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 SGK494L7N484 410 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 TXNL1O43396 289 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 LGI1O95970 557 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 H2AFB1P0C5Y9 115 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 MTHFD2P13995 350 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 ACKR3P25106 362 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 NKX2-1P43699 371 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 GSK3AP49840 483 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 FOXA1P55317 472 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 DPTQ07507 201 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 MPPED2Q15777 294 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 TBC1D28Q2M2D7 210 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 ZNF789Q5FWF6 425 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 TRAT1Q6PIZ9 186 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 GPX8Q8TED1 209 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 LAT2Q9GZY6 243 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 PCED1AQ9H1Q7 454 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 NKX2-4Q9H2Z4 354 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 TAF9BQ9HBM6 251 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 CRLF2Q9HC73 371 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 DYNLRB1Q9NP97 96 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 SLC23A2Q9UGH3 650 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 C19orf53Q9UNZ5 99 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 MYOCOSA0A1B0GUC4 107 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 KLK8O60259 260 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 MMP7P09237 267 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 KCNJ3P48549 501 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 RAB13P51153 203 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 CLDN20P56880 219 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 RPS25P62851 125 aaKnown RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 DCDP81605 110 aaKnown RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 MBTPS1Q14703 1052 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 ELAVL1Q15717 326 aaKnown RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 CST9LP1Q5W188 147 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 COX15Q7KZN9 410 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 TMEM25Q86YD3 366 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 ARRDC1Q8N5I2 433 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 ANKRD53Q8N9V6 530 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 CHST14Q8NCH0 376 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 TSACCQ96A04 125 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 PHYHIPLQ96FC7 376 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 PRR11Q96HE9 360 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 ZNF251Q9BRH9 671 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 UTP23Q9BRU9 249 aaKnown RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 SUCNR1Q9BXA5 334 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 C11orf54Q9H0W9 315 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 ATP13A2Q9NQ11 1180 aa5.63□□□□□ -1.51
SCN1A-203ENST00000409050 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.63□□□□□ -1.51
SCN1A-203ENST00000409050 C7orf72A4D263 438 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 ZNF732B4DXR9 585 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 C1SP09871 688 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 LIMS3P0CW19 117 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 LIMS4P0CW20 117 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 C21orf33P30042 268 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-203ENST00000409050 OTX2P32243 289 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 P2RX1P51575 399 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 ARG2P78540 354 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 DUSP8Q13202 625 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 SHHQ15465 462 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 RTL8BQ17RB0 113 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 THEM4Q5T1C6 240 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 LCN10Q6JVE6 187 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 ALKAL1Q6UXT8 129 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 FAM57BQ71RH2 274 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 PIANPQ8IYJ0 282 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 MORN4Q8NDC4 146 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 DYNC2LI1Q8TCX1 351 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 LINC01599Q8WXQ3 324 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 TAAR6Q96RI8 345 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 OBP2BQ9NPH6 170 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 SLC23A1Q9UHI7 598 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 FOXJ3Q9UPW0 622 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 HEMK1Q9Y5R4 338 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-203ENST00000409050 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-203ENST00000409050 TRBV11-1A0A0K0K1C0 115 aa5.62□□□□□ -1.51
SCN1A-203ENST00000409050 A0A1B0GWA3 101 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms