RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 A0A1W2PQL4 384 aaPredicted RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 GLCEO94923 617 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 VAMP5O95183 116 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 LIMS3P0CW19 117 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 LIMS4P0CW20 117 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 ZNF708P17019 499 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 AGFG1P52594 562 aaKnown RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 SLC25A1P53007 311 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 LSM3P62310 102 aaKnown RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 RASGEF1BQ0VAM2 473 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 SLC17A1Q14916 467 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 ZNF239Q16600 458 aaKnown RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 MEP1BQ16820 701 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 IGFL3Q6UXB1 125 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 B3GNT6Q6ZMB0 384 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 ASB18Q6ZVZ8 466 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 CREB3L2Q70SY1 520 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 DPY19L4Q7Z388 723 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 RFLNBQ8N5W9 214 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 NANOGP1Q8N7R0 232 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 RBMXL3Q8N7X1 1067 aaKnown RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 ADPRHL1Q8NDY3 354 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 OR13F1Q8NGS4 319 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 OR6N1Q8NGY5 312 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 OR6N2Q8NGY6 317 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 C9orf43Q8TAL5 461 aaPredicted RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 FCGR1BQ92637 280 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 HTRA1Q92743 480 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 CPNE4Q96A23 557 aaPredicted RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 NMD3Q96D46 503 aaKnown RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 SLC25A44Q96H78 314 aaPredicted RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 ADGRG7Q96K78 797 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 MGLLQ99685 303 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 TIMP4Q99727 224 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 ALG8Q9BVK2 526 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 ZDHHC11Q9H8X9 412 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 WDR76Q9H967 626 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 SEC61A2Q9H9S3 476 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 FGF20Q9NP95 211 aaPredicted RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 MRPS18AQ9NVS2 196 aaKnown RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 ERVK13-1Q9NX77 482 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 QPCTLQ9NXS2 382 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 SPRR3Q9UBC9 169 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 DKK4Q9UBT3 224 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 ING1Q9UK53 422 aaPredicted RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 CLEC4AQ9UMR7 237 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 B3GNT3Q9Y2A9 372 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 EXOGQ9Y2C4 368 aaKnown RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 SSUH2Q9Y2M2 353 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 COA3Q9Y2R0 106 aaPredicted RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 EXOSC1Q9Y3B2 195 aaKnown RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 NBEAQ8NFP9 2946 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 PCNX1Q96RV3 2341 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 IGKV1D-43A0A0B4J1Z2 117 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 J3QLW9 94 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 NOL3O60936 208 aaKnown RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 SEC14L2O76054 403 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 MPZL1O95297 269 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 SYNGR4O95473 234 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 IGHMP01871 453 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 TFP02787 698 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 CD36P16671 472 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 ZNF19P17023 458 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 JUNBP17275 347 aaPredicted RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 CRABP1P29762 137 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 LIPAP38571 399 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 PLA2G5P39877 138 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 SELENOPP49908 381 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 GLO1Q04760 184 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 POU4F2Q12837 409 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 DOC2BQ14184 412 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 IRF3Q14653 427 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 TSTQ16762 297 aaKnown RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 PLEKHN1Q494U1 663 aaPredicted RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 SLC35D3Q5M8T2 416 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 SYT6Q5T7P8 510 aaPredicted RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 LINC01590Q5TEZ4 76 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 UBE2UQ5VVX9 321 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 ZNF367Q7RTV3 350 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 SLC35F2Q8IXU6 374 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 KLHL36Q8N4N3 616 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 ZFP41Q8N8Y5 198 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 OR5M9Q8NGP3 310 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 SNX33Q8WV41 574 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 DGCR14Q96DF8 476 aaKnown RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 CRELD1Q96HD1 420 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 KCNK17Q96T54 332 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 TUBA1CQ9BQE3 449 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 FUNDC2Q9BWH2 189 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 FAM192AQ9GZU8 254 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 ISG20L2Q9H9L3 353 aaKnown RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 HAO2Q9NYQ3 351 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 VSX1Q9NZR4 365 aaPredicted RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 MCTS1Q9ULC4 181 aaKnown RBP3.3□□□□□ -1.88
RTN4-208ENST00000404909 MOKQ9UQ07 419 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 FKBP7Q9Y680 259 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 CEPT1Q9Y6K0 416 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 EPG5Q9HCE0 2579 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 A0A1W2PPL8 197 aa3.3□□□□□ -1.88
RTN4-208ENST00000404909 TAF4O00268 1085 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms