RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 TNFRSF10DQ9UBN6 386 aa6.15□□□□□ -1.43
LIMA1-202ENST00000394943 PRSS50Q9UI38 385 aa6.15□□□□□ -1.43
LIMA1-202ENST00000394943 M0R3G1 203 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 MRPL33O75394 65 aaKnown RBP6.14□□□□□ -1.43
LIMA1-202ENST00000394943 E2F6O75461 281 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 SNAP29O95721 258 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 IGLV3-1P01715 115 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 CTXN1P60606 82 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 KRR1Q13601 381 aaKnown RBP6.14□□□□□ -1.43
LIMA1-202ENST00000394943 NXNL2Q5VZ03 156 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 TMEM225Q6GV28 225 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 ACSM5Q6NUN0 579 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 HS3ST5Q8IZT8 346 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 SLC26A10Q8NG04 563 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 PTP4A1Q93096 173 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 SAMD8Q96LT4 415 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF570Q96NI8 536 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 EGLN3Q9H6Z9 239 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 B3GAT2Q9NPZ5 323 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 B9D1Q9UPM9 204 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 IGKV1D-43A0A0B4J1Z2 117 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 OR5H1A6NKK0 313 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 ZNHIT1O43257 154 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 DHHO43323 396 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 MPZL2O60487 215 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 SRSF10O75494 262 aaKnown RBP6.14□□□□□ -1.43
LIMA1-202ENST00000394943 ADORA3P0DMS8 318 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 PIPP12273 146 aaPredicted RBP6.14□□□□□ -1.43
LIMA1-202ENST00000394943 CBR1P16152 277 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 HIST1H1CP16403 213 aaKnown RBP6.14□□□□□ -1.43
LIMA1-202ENST00000394943 PCSK6P29122 969 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 CRABP1P29762 137 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 CLDN17P56750 224 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 CXCR4P61073 352 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 SRYQ05066 204 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.14□□□□□ -1.43
LIMA1-202ENST00000394943 LAPTM4AQ15012 233 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 COLCA1Q6ZS62 124 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 P4HA3Q7Z4N8 544 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 P3H2Q8IVL5 708 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 TIGD4Q8IY51 512 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 NUP37Q8NFH4 326 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 RHOXF1Q8NHV9 184 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 CIB1Q99828 191 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 C1orf198Q9H425 327 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 SIAEQ9HAT2 523 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 POLE4Q9NR33 117 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 FAM118AQ9NWS6 357 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF226Q9NYT6 803 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 MAGED1Q9Y5V3 778 aaPredicted RBP6.14□□□□□ -1.43
LIMA1-202ENST00000394943 OR6C6A6NF89 314 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 ACOD1A6NK06 481 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 RNF13O43567 381 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 PPP1R3DO95685 299 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 IGFBP5P24593 272 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 BIDP55957 195 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 RCN1Q15293 331 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 MEDAGQ5VYS4 303 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 ANKRD34AQ69YU3 496 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 LAIR2Q6ISS4 152 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 OR52J3Q8NH60 311 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 APH1BQ8WW43 257 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 RBM24Q9BX46 236 aaKnown RBP6.14□□□□□ -1.43
LIMA1-202ENST00000394943 ANKRD60Q9BZ19 345 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 COQ3Q9NZJ6 369 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 TANC2Q9HCD6 1990 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 BOD1L1Q8NFC6 3051 aa6.14□□□□□ -1.43
LIMA1-202ENST00000394943 SH3D21A4FU49 640 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 OR6C68A6NDL8 312 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 EIF4E1BA6NMX2 242 aaKnown RBP6.13□□□□□ -1.43
LIMA1-202ENST00000394943 DENRO43583 198 aaKnown RBP6.13□□□□□ -1.43
LIMA1-202ENST00000394943 GMFGO60234 142 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 MRPS14O60783 128 aaKnown RBP6.13□□□□□ -1.43
LIMA1-202ENST00000394943 SCG5P05408 212 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 GTF2E2P29084 291 aaKnown RBP6.13□□□□□ -1.43
LIMA1-202ENST00000394943 BHLHA15Q7RTS1 189 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-202ENST00000394943 AMIGO2Q86SJ2 522 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 UBQLNLQ8IYU4 475 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 COQ7Q99807 217 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 OPN3Q9H1Y3 402 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-202ENST00000394943 SMPD3Q9NY59 655 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-202ENST00000394943 CYB5R1Q9UHQ9 305 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 RRP15Q9Y3B9 282 aaKnown RBP6.13□□□□□ -1.43
LIMA1-202ENST00000394943 DEFB108AA8MXU0 73 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF587BE7ETH6 402 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 EI24O14681 340 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 GLCEO94923 617 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 UBL3O95164 117 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 IGHA1P01876 353 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF35P13682 527 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 LAP3P28838 519 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 ACVR1BP36896 505 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 HSPA13P48723 471 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 CSNK1A1P48729 337 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 ROM1Q03395 351 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 NCMAPQ5T1S8 102 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 NIPAL3Q6P499 406 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 ZNF771Q7L3S4 317 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-202ENST00000394943 STK32CQ86UX6 486 aa6.13□□□□□ -1.43
LIMA1-202ENST00000394943 FJX1Q86VR8 437 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms