RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 TCEA1P23193 301 aaKnown RBP16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 ACVR1BP36896 505 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 CD79BP40259 229 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 DIO1P49895 249 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 ASAH1Q13510 395 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 RIN1Q13671 783 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 ZNF79Q15937 498 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 ACKR1Q16570 336 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 RSPO4Q2I0M5 234 aaPredicted RBP16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 TMEM176BQ3YBM2 270 aaPredicted RBP16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 SPINK14Q6IE38 97 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 ZNF227Q86WZ6 799 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 KLBQ86Z14 1044 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 NEIL3Q8TAT5 605 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 MIB2Q96AX9 1013 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 KCTD12Q96CX2 325 aaKnown RBP16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 NPAS1Q99742 590 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 NAA11Q9BSU3 229 aaPredicted RBP16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 HCAR1Q9BXC0 346 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 PLPP2O43688 288 aa16.33■□□□□ 0.2
CCDC88C-203ENST00000389856 EFNA2O43921 213 aa16.33■□□□□ 0.2
CCDC88C-203ENST00000389856 WISP1O95388 367 aa16.33■□□□□ 0.2
CCDC88C-203ENST00000389856 CLEC2LP0C7M8 214 aa16.33■□□□□ 0.2
CCDC88C-203ENST00000389856 PRKAR1AP10644 381 aa16.33■□□□□ 0.2
CCDC88C-203ENST00000389856 IL7P13232 177 aa16.33■□□□□ 0.2
CCDC88C-203ENST00000389856 GDF1P27539 372 aa16.33■□□□□ 0.2
CCDC88C-203ENST00000389856 CLN3Q13286 438 aa16.33■□□□□ 0.2
CCDC88C-203ENST00000389856 DNM1P34Q6PK57 102 aa16.33■□□□□ 0.2
CCDC88C-203ENST00000389856 PAMR1Q6UXH9 720 aa16.33■□□□□ 0.2
CCDC88C-203ENST00000389856 TMPPEQ6ZT21 453 aa16.33■□□□□ 0.2
CCDC88C-203ENST00000389856 AKAP14Q86UN6 197 aa16.33■□□□□ 0.2
CCDC88C-203ENST00000389856 TPRA1Q86W33 373 aa16.33■□□□□ 0.2
CCDC88C-203ENST00000389856 EGFL6Q8IUX8 553 aa16.33■□□□□ 0.2
CCDC88C-203ENST00000389856 OR2M7Q8NG81 312 aa16.33■□□□□ 0.2
CCDC88C-203ENST00000389856 FAM210AQ96ND0 272 aa16.33■□□□□ 0.2
CCDC88C-203ENST00000389856 DDOQ99489 341 aa16.33■□□□□ 0.2
CCDC88C-203ENST00000389856 TMED9Q9BVK6 235 aa16.33■□□□□ 0.2
CCDC88C-203ENST00000389856 OR2B2Q9GZK3 357 aa16.33■□□□□ 0.2
CCDC88C-203ENST00000389856 PAIP2BQ9ULR5 123 aaKnown RBP16.33■□□□□ 0.2
CCDC88C-203ENST00000389856 OR6C68A6NDL8 312 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 NKX2-8O15522 239 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 ARHGEF9O43307 516 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 CD1AP06126 327 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 IL11P20809 199 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 SFTPDP35247 375 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 CDKN2AP42771 156 aaKnown RBP16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 EIF2B2P49770 351 aaKnown RBP16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 ARG2P78540 354 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 HSF2Q03933 536 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 CBX3Q13185 183 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 ZNF239Q16600 458 aaKnown RBP16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 MESTQ5EB52 335 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 SLC25A25Q6KCM7 469 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 MS4A15Q8N5U1 240 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 TMEM99Q8N816 258 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 TEX19Q8NA77 164 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 OR10H4Q8NGA5 316 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 OR5M1Q8NGP8 315 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 SMPDL3BQ92485 455 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 HPS1Q92902 700 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 DNAJA3Q96EY1 480 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 SFXN2Q96NB2 322 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 MNTQ99583 582 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 SOSTQ9BQB4 213 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 SLC22A4Q9H015 551 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 TMEM185BQ9H7F4 350 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 ADGRL4Q9HBW9 690 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 RPRD1BQ9NQG5 326 aaKnown RBP16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 TBC1D24Q9ULP9 559 aa16.32■□□□□ 0.2
CCDC88C-203ENST00000389856 SPEGQ15772 3267 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 LRRC3CA6NJW4 275 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 TMCC2O75069 709 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 TRAPPC6AO75865 159 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 VAMP5O95183 116 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 OR2T7P0C7T2 308 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 CRABP1P29762 137 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 GPR85P60893 370 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 ACTA2P62736 377 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 ACTG2P63267 376 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 HSF1Q00613 529 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 PDSS1Q5T2R2 415 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 ATP1A1-AS1Q5TC04 95 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 VASNQ6EMK4 673 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 UEVLDQ8IX04 471 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 SYS1Q8N2H4 156 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 ZFP41Q8N8Y5 198 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 TMEM178AQ8NBL3 297 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 OR6K6Q8NGW6 343 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 OR2T27Q8NH04 317 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 ZNF519Q8TB69 540 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 HAS2Q92819 552 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 KLHL15Q96M94 604 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 C14orf119Q9NWQ9 140 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 RASD1Q9Y272 281 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 FKBP7Q9Y680 259 aa16.31■□□□□ 0.2
CCDC88C-203ENST00000389856 A0A0G2JMM0 328 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 LOC102725191A0A1B0GVB3 256 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 A0A1W2PPB8 328 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 A0A1W2PRS3 328 aa16.3■□□□□ 0.2
CCDC88C-203ENST00000389856 PRSS37A4D1T9 235 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms