RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 CHRNA10Q9GZZ6 450 aa4.33□□□□□ -1.72
USP48-202ENST00000374730 MIXL1Q9H2W2 232 aa4.33□□□□□ -1.72
USP48-202ENST00000374730 UBQLN3Q9H347 655 aa4.33□□□□□ -1.72
USP48-202ENST00000374730 TCEAL2Q9H3H9 227 aaPredicted RBP4.33□□□□□ -1.72
USP48-202ENST00000374730 UCK1Q9HA47 277 aa4.33□□□□□ -1.72
USP48-202ENST00000374730 CMC2Q9NRP2 79 aa4.33□□□□□ -1.72
USP48-202ENST00000374730 DECR2Q9NUI1 292 aa4.33□□□□□ -1.72
USP48-202ENST00000374730 PLEKHB1Q9UF11 243 aaPredicted RBP4.33□□□□□ -1.72
USP48-202ENST00000374730 TBC1D24Q9ULP9 559 aa4.33□□□□□ -1.72
USP48-202ENST00000374730 PAIP2BQ9ULR5 123 aaKnown RBP4.33□□□□□ -1.72
USP48-202ENST00000374730 SLC7A7Q9UM01 511 aa4.33□□□□□ -1.72
USP48-202ENST00000374730 SLC35A3Q9Y2D2 325 aa4.33□□□□□ -1.72
USP48-202ENST00000374730 YARS2Q9Y2Z4 477 aaKnown RBP4.33□□□□□ -1.72
USP48-202ENST00000374730 CAB39Q9Y376 341 aaPredicted RBP4.33□□□□□ -1.72
USP48-202ENST00000374730 MED31Q9Y3C7 131 aa4.33□□□□□ -1.72
USP48-202ENST00000374730 EML5Q05BV3 1969 aa4.33□□□□□ -1.72
USP48-202ENST00000374730 NPIPA5A0A0B4J1W7 369 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 A0A1B0GWA3 101 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 GXYLT2A0PJZ3 443 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 HTR3EA5X5Y0 456 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 CCDC182A6NF36 153 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 TMEM221A6NGB7 291 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 LILRA5A6NI73 299 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 NPIPA7E9PJI5 369 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 SGK494L7N484 410 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 GTPBP1O00178 669 aaKnown RBP4.32□□□□□ -1.72
USP48-202ENST00000374730 GABRPO00591 440 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 POLR1CO15160 346 aaPredicted RBP4.32□□□□□ -1.72
USP48-202ENST00000374730 RGS5O15539 181 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 ZNF749O43361 778 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 OR10H2O60403 315 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 SRPX2O60687 465 aaPredicted RBP4.32□□□□□ -1.72
USP48-202ENST00000374730 HCN1O60741 890 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 CTNSO60931 367 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 RDH16O75452 317 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 NSA2O95478 260 aaKnown RBP4.32□□□□□ -1.72
USP48-202ENST00000374730 CH25HO95992 272 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 HLA-DQB1P01920 261 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 CT62P0C5K7 136 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 TRAPPC2P0DI81 140 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 TRAPPC2BP0DI82 140 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 NPIPA8P0DM63 369 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 SPTBP11277 2137 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 IFI30P13284 250 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 RNH1P13489 461 aaKnown RBP4.32□□□□□ -1.72
USP48-202ENST00000374730 CTSEP14091 401 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 S1PR1P21453 382 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 PAICSP22234 425 aaKnown RBP4.32□□□□□ -1.72
USP48-202ENST00000374730 SLC2A5P22732 501 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 SDC2P34741 201 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 GABRA3P34903 492 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 CD79BP40259 229 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 CASP3P42574 277 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 RPS5P46782 204 aaKnown RBP4.32□□□□□ -1.72
USP48-202ENST00000374730 CAPZBP47756 277 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 FASLGP48023 281 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 EMDP50402 254 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 VSX2P58304 361 aaPredicted RBP4.32□□□□□ -1.72
USP48-202ENST00000374730 PPP1CAP62136 330 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 ACTC1P68032 377 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 ACTA1P68133 377 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 FABP5Q01469 135 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 MXD1Q05195 221 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 SCN1BQ07699 218 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 CD300CQ08708 224 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 SELENBP1Q13228 472 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 FAM53BQ14153 422 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 FGFBP1Q14512 234 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 EXOSC7Q15024 291 aaKnown RBP4.32□□□□□ -1.72
USP48-202ENST00000374730 TRAM1Q15629 374 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 ZNHIT3Q15649 155 aaPredicted RBP4.32□□□□□ -1.72
USP48-202ENST00000374730 ZNF141Q15928 474 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 ZNF791Q3KP31 576 aaPredicted RBP4.32□□□□□ -1.72
USP48-202ENST00000374730 TMEM31Q5JXX7 168 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.32□□□□□ -1.72
USP48-202ENST00000374730 AGAP6Q5VW22 663 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 PLBD1Q6P4A8 553 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 ARHGAP11AQ6P4F7 1023 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 INO80CQ6PI98 192 aaPredicted RBP4.32□□□□□ -1.72
USP48-202ENST00000374730 SMARCD3Q6STE5 483 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 MEPCEQ7L2J0 689 aaKnown RBP4.32□□□□□ -1.72
USP48-202ENST00000374730 SHFQ7M4L6 423 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 ZNF550Q7Z398 422 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 TAF8Q7Z7C8 310 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 AKAP14Q86UN6 197 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 LHFPL3Q86UP9 236 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 GPALPP1Q8IXQ4 340 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 ZNF595Q8IYB9 648 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 CDK20Q8IZL9 346 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 ACBD7Q8N6N7 88 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 SYT14Q8NB59 555 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 ATP6V1C2Q8NEY4 427 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 BBS1Q8NFJ9 593 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 OR6C4Q8NGE1 309 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 OR52R1Q8NGF1 315 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 OR5T3Q8NGG3 340 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 OR1N1Q8NGS0 311 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 PFN4Q8NHR9 129 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 HMGB4Q8WW32 186 aa4.32□□□□□ -1.72
USP48-202ENST00000374730 SPRYD4Q8WW59 207 aaPredicted RBP4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms