RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 OR14L1PQ8NHC6 308 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 PTDSS2Q9BVG9 487 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 GAREM1Q9H706 876 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 HCSTQ9UBK5 93 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 RAB22AQ9UL26 194 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 CSAG2Q9Y5P2 127 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 SLC5A10A0PJK1 596 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 HMGN4O00479 90 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 FCGR2AP12318 317 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 MTCP1P56278 107 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 ERVK-16P61578 105 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 RBMS3Q6XE24 437 aaKnown RBP17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 CMTM4Q8IZR5 234 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 CLRN3Q8NCR9 226 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 FGGYQ96C11 551 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 VN1R3Q9BXE9 311 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 METTL9Q9H1A3 318 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 TRAPPC4Q9Y296 219 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 TPPPO94811 219 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 SLC16A12Q6ZSM3 486 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 PRSS42Q7Z5A4 293 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 MMP21Q8N119 569 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 OR2AK2Q8NG84 335 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 OR13C5Q8NGS8 318 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 RNF170Q96K19 258 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 SLC22A12Q96S37 553 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 B4GALT7Q9UBV7 327 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 FBXL4Q9UKA2 621 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 MICAL3Q7RTP6 2002 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 DOCK2Q92608 1830 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 A0A1B0GUH1 482 aa17.98■□□□□ 0.47
CCDC88B-202ENST00000356786 TO15178 435 aa17.98■□□□□ 0.47
CCDC88B-202ENST00000356786 SEMA4FO95754 770 aa17.98■□□□□ 0.47
CCDC88B-202ENST00000356786 RAB4AP20338 218 aa17.98■□□□□ 0.47
CCDC88B-202ENST00000356786 ATP1B3P54709 279 aa17.98■□□□□ 0.47
CCDC88B-202ENST00000356786 IHHQ14623 411 aa17.98■□□□□ 0.47
CCDC88B-202ENST00000356786 CLLU1Q5K131 121 aa17.98■□□□□ 0.47
CCDC88B-202ENST00000356786 ABHD17CQ6PCB6 329 aa17.98■□□□□ 0.47
CCDC88B-202ENST00000356786 ZNF836Q6ZNA1 936 aa17.98■□□□□ 0.47
CCDC88B-202ENST00000356786 LINC00346Q8IVM7 164 aa17.98■□□□□ 0.47
CCDC88B-202ENST00000356786 IMPA2O14732 288 aa17.98■□□□□ 0.47
CCDC88B-202ENST00000356786 P04436 131 aa17.98■□□□□ 0.47
CCDC88B-202ENST00000356786 OR1D4P47884 311 aa17.98■□□□□ 0.47
CCDC88B-202ENST00000356786 MED18Q9BUE0 208 aa17.98■□□□□ 0.47
CCDC88B-202ENST00000356786 GNG13Q9P2W3 67 aa17.98■□□□□ 0.47
CCDC88B-202ENST00000356786 RARRES3Q9UL19 164 aa17.98■□□□□ 0.47
CCDC88B-202ENST00000356786 SECTM1Q8WVN6 248 aa17.98■□□□□ 0.47
CCDC88B-202ENST00000356786 SPACA1Q9HBV2 294 aa17.98■□□□□ 0.47
CCDC88B-202ENST00000356786 SLC39A9Q9NUM3 307 aa17.98■□□□□ 0.47
CCDC88B-202ENST00000356786 HPSE2Q8WWQ2 592 aa17.98■□□□□ 0.47
CCDC88B-202ENST00000356786 AUNIPQ9H7T9 357 aa17.98■□□□□ 0.47
CCDC88B-202ENST00000356786 CEBPZOSA8MTT3 80 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 ZNF728P0DKX0 622 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 RABIFP47224 123 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 MRPL19P49406 292 aaKnown RBP17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 SSTP61278 116 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 PMPCAQ10713 525 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 SLC35D3Q5M8T2 416 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 SFRP5Q5T4F7 317 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 FAM219BQ5XKK7 198 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 PIGCQ92535 297 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 EXOSC3Q9NQT5 275 aaKnown RBP17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 GAB2Q9UQC2 676 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 TMEM202A6NGA9 273 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 ACTL6BO94805 426 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 CSNK1G2P78368 415 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 NAA40Q86UY6 237 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 CMC2Q9NRP2 79 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 TUBAL3A6NHL2 446 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 PDLIM3Q53GG5 364 aaPredicted RBP17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 PLCXD3Q63HM9 321 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 OR52A1Q9UKL2 312 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 DDAH2O95865 285 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 ACSM4P0C7M7 580 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 DPP4P27487 766 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 FAM27D1Q5T7N8 215 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 SHEQ5VZ18 495 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 ZNF425Q6IV72 752 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 OGFOD3Q6PK18 319 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 SFT2D1Q8WV19 159 aa17.97■□□□□ 0.47
CCDC88B-202ENST00000356786 OR6C76A6NM76 312 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 NUDT19A8MXV4 375 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 OR2C1O95371 312 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 FOLR1P15328 257 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 HTRA4P83105 476 aaPredicted RBP17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 ADIRFQ15847 76 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 HIST2H3AQ71DI3 136 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 GABRG1Q8N1C3 465 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 ANKRD53Q8N9V6 530 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 SFXN1Q9H9B4 322 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 TAS2R5Q9NYW4 299 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 NTNG1Q9Y2I2 539 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 BCORQ6W2J9 1755 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 SNRPGP15A8MWD9 76 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 AIPO00170 330 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 PSMB6P28072 239 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 SLC6A12P48065 614 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 TESK1Q15569 626 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 NKAIN3Q8N8D7 197 aa17.96■□□□□ 0.47
CCDC88B-202ENST00000356786 SUMF1Q8NBK3 374 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms