RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 TIMP1P01033 207 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 HLA-AP01891 365 aaKnown RBP7.42□□□□□ -1.22
ATG4A-201ENST00000343524 CHRM4P08173 479 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 SNRNP70P08621 437 aaKnown RBP7.42□□□□□ -1.22
ATG4A-201ENST00000343524 HCKP08631 526 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 OR2T7P0C7T2 308 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 LINC00614P0C842 121 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 FAM157CP0CG43 387 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 ADRB3P13945 408 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 EDNRAP25101 427 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 PRSS3P35030 304 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 ADCYAP1R1P41586 468 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 CX3CR1P49238 355 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 PPM1FP49593 454 aaPredicted RBP7.42□□□□□ -1.22
ATG4A-201ENST00000343524 PGFP49763 221 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 SLC16A1P53985 500 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 ATP1B3P54709 279 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 CASP6P55212 293 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 RAP1AP62834 184 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 LTBQ06643 244 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 ATXN7L3Q14CW9 347 aaPredicted RBP7.42□□□□□ -1.22
ATG4A-201ENST00000343524 C21orf62-AS1Q17RA5 79 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 MST1LQ2TV78 715 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 THEM4Q5T1C6 240 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 ALKBH2Q6NS38 261 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 FIGNL1Q6PIW4 674 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 SLCO4C1Q6ZQN7 724 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 LYG2Q86SG7 212 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 MRPL52Q86TS9 123 aaKnown RBP7.42□□□□□ -1.22
ATG4A-201ENST00000343524 CARFQ8N187 725 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 ZNF433Q8N7K0 673 aaPredicted RBP7.42□□□□□ -1.22
ATG4A-201ENST00000343524 OR4E2Q8NGC2 313 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 OR13C5Q8NGS8 318 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 OR2T27Q8NH04 317 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 SFXN5Q8TD22 340 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 ASB17Q8WXJ9 295 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 DCUN1D4Q92564 292 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 FBXO32Q969P5 355 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 EID2BQ96D98 161 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 MARS2Q96GW9 593 aaKnown RBP7.42□□□□□ -1.22
ATG4A-201ENST00000343524 CD180Q99467 661 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 GPR61Q9BZJ8 451 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 LINC00597Q9H2U6 94 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 OR52D1Q9H346 318 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 HRH4Q9H3N8 390 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 CWH43Q9H720 699 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 FN3KRPQ9HA64 309 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 KCNK12Q9HB15 430 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 IL21RQ9HBE5 538 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 NOX4Q9NPH5 578 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 UBQLN4Q9NRR5 601 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 MARCH5Q9NX47 278 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 VSX1Q9NZR4 365 aaPredicted RBP7.42□□□□□ -1.22
ATG4A-201ENST00000343524 LHX3Q9UBR4 397 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 FAM96BQ9Y3D0 163 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 PRRC2BQ5JSZ5 2229 aaKnown RBP7.42□□□□□ -1.22
ATG4A-201ENST00000343524 NUP214P35658 2090 aaPredicted RBP7.42□□□□□ -1.22
ATG4A-201ENST00000343524 hCG_1809904A0A1W2PP81 198 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 A0A1W2PR64 198 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 A0A1W2PRV1 198 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 CDC40O60508 579 aaKnown RBP eCLIP7.42□□□□□ -1.22
ATG4A-201ENST00000343524 SRPX2O60687 465 aaPredicted RBP7.42□□□□□ -1.22
ATG4A-201ENST00000343524 ZNF432O94892 652 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 SLC2A10O95528 541 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 PPP1R3DO95685 299 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 KLK1P06870 262 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 MMP3P08254 477 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 TIMP2P16035 220 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 ITPKBP27987 946 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 PSMB6P28072 239 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 ADH6P28332 368 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 MPIP34949 423 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 GPR4P46093 362 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 SULT1A1P50225 295 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 CCL23P55773 120 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 NKX6-1P78426 367 aaPredicted RBP7.42□□□□□ -1.22
ATG4A-201ENST00000343524 GAGE1Q13065 139 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 DHRS2Q13268 280 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 SLBPQ14493 270 aaKnown RBP eCLIP7.42□□□□□ -1.22
ATG4A-201ENST00000343524 MEF2DQ14814 521 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 OR8G1Q15617 311 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 LRRC37A5PQ49AS3 106 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 AKIRIN2Q53H80 203 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 BEX5Q5H9J7 111 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 PIP5KL1Q5T9C9 394 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 ANKRD16Q6P6B7 361 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 DHRS11Q6UWP2 260 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 RPTNQ6XPR3 784 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 TMEM64Q6YI46 380 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 PEG10Q86TG7 708 aaKnown RBP7.42□□□□□ -1.22
ATG4A-201ENST00000343524 NRMQ8IXM6 262 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 SLC35F3Q8IY50 421 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 DND1Q8IYX4 353 aaKnown RBP7.42□□□□□ -1.22
ATG4A-201ENST00000343524 GABRG1Q8N1C3 465 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 C19orf47Q8N9M1 422 aaKnown RBP7.42□□□□□ -1.22
ATG4A-201ENST00000343524 ZNF610Q8N9Z0 462 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 OR4K14Q8NGD5 310 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 OR9A4Q8NGU2 314 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 M1APQ8TC57 530 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 TMEM169Q96HH4 297 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms