RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 OR7A17O14581 309 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 PFDN1O60925 122 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 MOSPD3O75425 235 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 TXNDC12O95881 172 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 RECKO95980 971 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 GRPRP30550 384 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 CAMK2BQ13554 666 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 CCNJQ5T5M9 372 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 TRIM46Q7Z4K8 759 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 PQLC3Q8N755 202 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 RORBQ92753 470 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 FOXRED1Q96CU9 486 aaPredicted RBP7.6□□□□□ -1.19
HMGB1-203ENST00000341423 NOX3Q9HBY0 568 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 TMED3Q9Y3Q3 217 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 ZNF500O60304 480 aaPredicted RBP7.6□□□□□ -1.19
HMGB1-203ENST00000341423 SERPINE2P07093 398 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 FAM106CPP0CH98 169 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 CR2P20023 1033 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 NR4A1P22736 598 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 VWA1Q6PCB0 445 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 GID4Q8IVV7 300 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 ZNF786Q8N393 782 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 UBAC2Q8NBM4 344 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 OR4F17Q8NGA8 305 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 MOB3AQ96BX8 217 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 OR4F4Q96R69 305 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 TAAR6Q96RI8 345 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 SOX7Q9BT81 388 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 C20orf24Q9BUV8 137 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 TMUB1Q9BVT8 246 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 ANKRA2Q9H9E1 313 aa7.6□□□□□ -1.19
HMGB1-203ENST00000341423 DICER1Q9UPY3 1922 aaKnown RBP7.59□□□□□ -1.19
HMGB1-203ENST00000341423 BORCS7-ASMTA0A0B4J1R7 106 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 OR6C6A6NF89 314 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 DEGS1O15121 323 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 SYNGR3O43761 229 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 TNFSF10P50591 281 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 CDKL1Q00532 357 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 RIPK1Q13546 671 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 VMA21Q3ZAQ7 101 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 TMEM244Q5VVB8 128 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 OR6F1Q8NGZ6 308 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 BORCS7Q96B45 105 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 PDP2Q9P2J9 529 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 FZR1Q9UM11 496 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 UBE2J1Q9Y385 318 aaPredicted RBP7.59□□□□□ -1.19
HMGB1-203ENST00000341423 A8MT66 165 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 TMPRSS2O15393 492 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 SEC14L2O76054 403 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 ABHD2P08910 425 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 LMO1P25800 156 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 IMPA1P29218 277 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 PRDX6P30041 224 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 RPS26P62854 115 aaKnown RBP7.59□□□□□ -1.19
HMGB1-203ENST00000341423 SLC25A11Q02978 314 aaKnown RBP7.59□□□□□ -1.19
HMGB1-203ENST00000341423 EMX2Q04743 252 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 RRN3P1Q2M238 152 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 FAHD1Q6P587 224 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 SMIM15Q7Z3B0 74 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 SERPINA12Q8IW75 414 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 RNF148Q8N7C7 305 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 LMO3Q8TAP4 145 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 AP3S1Q92572 193 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 TMEM200CA6NKL6 621 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 CSF1P09603 554 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 B4GALT1P15291 398 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 TBPP20226 339 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 NPY1RP25929 384 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 PRKAR1BP31321 381 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 ID1P41134 155 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 GCGRP47871 477 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 DLX5P56178 289 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 POU4F2Q12837 409 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 KIF2BQ8N4N8 673 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 OR4K13Q8NH42 304 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 SLC25A40Q8TBP6 338 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 PCNPQ8WW12 178 aaKnown RBP7.59□□□□□ -1.19
HMGB1-203ENST00000341423 TOMM40LQ969M1 308 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 TMEM19Q96HH6 336 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 SPACA1Q9HBV2 294 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 MARCH4Q9P2E8 410 aaPredicted RBP7.59□□□□□ -1.19
HMGB1-203ENST00000341423 RNF7Q9UBF6 113 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 EXO1Q9UQ84 846 aaKnown RBP7.59□□□□□ -1.19
HMGB1-203ENST00000341423 U3KQV3 271 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 MYO7BQ6PIF6 2116 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 CACNA1IQ9P0X4 2223 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 FAM181BA6NEQ2 426 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 J3QLW9 94 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 DHHO43323 396 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 CTSVO60911 334 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 ZNF19P17023 458 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 ZNF140P52738 457 aaPredicted RBP7.59□□□□□ -1.19
HMGB1-203ENST00000341423 KCNJ11Q14654 390 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 SPATA46Q5T0L3 261 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 KIRREL2Q6UWL6 708 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 ZNF501Q96CX3 271 aaPredicted RBP7.59□□□□□ -1.19
HMGB1-203ENST00000341423 SLC23A2Q9UGH3 650 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 TFR2Q9UP52 801 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 PLLPQ9Y342 182 aa7.59□□□□□ -1.19
HMGB1-203ENST00000341423 MEGF11A6BM72 1044 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms