RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 WNT4P56705 351 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 LCN6P62502 163 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 BDH1Q02338 343 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 ACSM1Q08AH1 577 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 SPHARQ15513 63 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 THEM4Q5T1C6 240 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 C19orf48Q6RUI8 117 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 SLC16A9Q7RTY1 509 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 GPAT4Q86UL3 456 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 UBQLNLQ8IYU4 475 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 TMEM123Q8N131 208 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 TMEM45BQ96B21 275 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 INTS12Q96CB8 462 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 DGCR14Q96DF8 476 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 WDYHV1Q96HA8 205 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 TSSK2Q96PF2 358 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 TAAR6Q96RI8 345 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 DOK1Q99704 481 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 TIMP4Q99727 224 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 BCL7BQ9BQE9 202 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 YIPF3Q9GZM5 350 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 GP6Q9HCN6 339 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 ING1Q9UK53 422 aaPredicted RBP13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 LHX6Q9UPM6 363 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 CAB39Q9Y376 341 aaPredicted RBP13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 ZNF175Q9Y473 711 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 FLVCR1Q9Y5Y0 555 aa13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 URB1O60287 2271 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-202ENST00000334448 MED12Q93074 2177 aa13.27□□□□□ -0.28
CCDC88C-202ENST00000334448 SLC35F4A4IF30 521 aa13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 TMEM8BA6NDV4 472 aa13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 NPIPA2E9PIF3 369 aa13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 NPIPA3F8WFD2 350 aa13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 APOL3O95236 402 aa13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 HRGP04196 525 aa13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 GAAP10253 952 aa13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 PYCR1P32322 319 aa13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 MLLT11Q13015 90 aaPredicted RBP13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 GALEQ14376 348 aa13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 PCK2Q16822 640 aa13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 TIGD6Q17RP2 521 aa13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 UNQ6494/PRO21346Q6UXR6 183 aa13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 B3GLCTQ6Y288 498 aa13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 FCRLAQ7L513 359 aa13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 SHFQ7M4L6 423 aa13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 ADGRE4PQ86SQ3 457 aa13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 SYS1Q8N2H4 156 aa13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 KLHL36Q8N4N3 616 aa13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 TMEM54Q969K7 222 aa13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 YIPF6Q96EC8 236 aa13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 ABHD17AQ96GS6 310 aa13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 OR2M2Q96R28 347 aa13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 MYCBPQ99417 103 aaPredicted RBP13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 DEFB127Q9H1M4 99 aa13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 FOXD3Q9UJU5 478 aaPredicted RBP13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 MCTS1Q9ULC4 181 aaKnown RBP13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 TNRC6AQ8NDV7 1962 aaKnown RBP13.27□□□□□ -0.29
CCDC88C-202ENST00000334448 DMXL2Q8TDJ6 3036 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 LOC400499M0QZD8 3231 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 OR14I1A6ND48 311 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 TRIM64BA6NI03 449 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 K7EM74 188 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 TAF4O00268 1085 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 GPR171O14626 319 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 SLC16A7O60669 478 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 KHDRBS3O75525 346 aaKnown RBP13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 SCG5P05408 212 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 PSMB9P28065 219 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 TGFBR2P37173 567 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 TMBIM6P55061 237 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 CLDN17P56750 224 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 ZNF85Q03923 595 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 GLO1Q04760 184 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 TEX30Q5JUR7 227 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 C10orf128Q5T292 105 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 SLC25A47Q6Q0C1 308 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 ZNF322Q6U7Q0 402 aaPredicted RBP13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 FOXL2NBQ6ZUU3 175 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 SLC35F2Q8IXU6 374 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 GHDCQ8N2G8 530 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 SLC26A10Q8NG04 563 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 OR51L1Q8NGJ5 315 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 OR6K6Q8NGW6 343 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 PNPLA2Q96AD5 504 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 ZNF845Q96IR2 970 aaPredicted RBP13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 RBP7Q96R05 134 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 OR5M11Q96RB7 305 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 MGLLQ99685 303 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 LDAHQ9H6V9 325 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 BCO1Q9HAY6 547 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 SRA1Q9HD15 236 aaKnown RBP13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 KLHL9Q9P2J3 617 aa13.26□□□□□ -0.29
CCDC88C-202ENST00000334448 IGHV3-15A0A0B4J1V0 119 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 ZNF726A6NNF4 738 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 ZNF724A8MTY0 619 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 SELENOFO60613 162 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 SYNGR4O95473 234 aa13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 CRYABP02511 175 aaKnown RBP13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 HOXD11P31277 338 aaPredicted RBP13.25□□□□□ -0.29
CCDC88C-202ENST00000334448 ACTA2P62736 377 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms