RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 CLEC1AQ8NC01 280 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 OR4S1Q8NGB4 309 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 OR5M8Q8NGP6 311 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 SLC2A12Q8TD20 617 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 MOAP1Q96BY2 351 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 ACKR4Q9NPB9 350 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 UQCC1Q9NVA1 299 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 CHRNA9Q9UGM1 479 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 SHPKQ9UHJ6 478 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 TRPM6Q9BX84 2022 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 OR2F2O95006 317 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 HLA-AP01891 365 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 ZNF44P15621 663 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 ADH6P28332 368 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 PRSS3P35030 304 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 POU3F4P49335 361 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 DUSP8Q13202 625 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 OR2F1Q13607 317 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 SMCO1Q147U7 214 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 INPP5JQ15735 1006 aaPredicted RBP12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 ACER2Q5QJU3 275 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 ARHGAP40Q5TG30 622 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 TMPPEQ6ZT21 453 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 ACOT7LQ6ZUV0 252 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 TMEM200AQ86VY9 491 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 OR5AP2Q8NGF4 316 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 VWCEQ96DN2 955 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 RAB3DO95716 219 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 ITGA5P08648 1049 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 SPI1P17947 270 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 SLC6A6P31641 620 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 DIO1P49895 249 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 PEA15Q15121 130 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 TSC22D1Q15714 1073 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 ELAVL1Q15717 326 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 KCTD9Q7L273 389 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 OR5AK2Q8NH90 309 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 CASTOR1Q8WTX7 329 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 TMEM106AQ96A25 262 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 C14orf79Q96F83 325 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 CLCC1Q96S66 551 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 ATG5Q9H1Y0 275 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 HCFC1R1Q9NWW0 138 aa12.23□□□□□ -0.45
CCDC88C-201ENST00000331194 A0A1B0GWA3 101 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 TVP23AA6NH52 213 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 GPRIN2O60269 458 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 PMS2P2O95744 297 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 GPANK1O95872 356 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 CD8AP01732 235 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 ABOP16442 354 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 DDX6P26196 483 aaKnown RBP eCLIP12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 PRDX1Q06830 199 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 FABP9Q0Z7S8 132 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 EIF2S3LQ2VIR3 472 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 ARHGAP11BQ3KRB8 267 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 Q499Y3 187 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 C3orf33Q6P1S2 294 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 ARHGAP11AQ6P4F7 1023 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 USP53Q70EK8 1073 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 TMIEQ8NEW7 156 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 OR1J4Q8NGS1 313 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 PPP1R14AQ96A00 147 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 ATXN7L1Q9ULK2 861 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 HCFC2Q9Y5Z7 792 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 MUC3AQ02505 3323 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 HEATR5AQ86XA9 2040 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 A0A1B0GV90 55 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 GXYLT2A0PJZ3 443 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 WNT11O96014 354 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 ERGP11308 486 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 SDHAP31040 664 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 CCR2P41597 374 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 MLF2Q15773 248 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 C2orf76Q3KRA6 126 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 ANKRD16Q6P6B7 361 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 ENPP7Q6UWV6 458 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 ZNF813Q6ZN06 617 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 ZNF627Q7L945 461 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 NPEPL1Q8NDH3 523 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 LAT2Q9GZY6 243 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 CARHSP1Q9Y2V2 147 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 OBSL1O75147 1896 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 A0A1B0GTI1 187 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 C17orf113A0A1B0GUU1 675 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 DUXAA6NLW8 204 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 OR52A4PA6NMU1 304 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 DCNP07585 359 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 MUC1P15941 1255 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 CSRP1P21291 193 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 ECH1Q13011 328 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 EXOSC7Q15024 291 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 DCST2Q5T1A1 773 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 C10orf91Q5T1B1 145 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 PRAMEF17Q5VTA0 474 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 MISPQ8IVT2 679 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 SLC35F3Q8IY50 421 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 ELP5Q8TE02 316 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 DNAJA3Q96EY1 480 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 GAS2L1Q99501 681 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 C1orf198Q9H425 327 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms