RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 PMCHP20382 165 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 TAS2R46P59540 309 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 RUNX2Q13950 521 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 ZNF345Q14585 488 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 SGCAQ16586 387 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 MBOAT2Q6ZWT7 520 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 NDUFAF7Q7L592 441 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 HMGN2P46Q86SG4 172 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 CMTM1Q8IZ96 169 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 NHLRC2Q8NBF2 726 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 SAP130Q9H0E3 1048 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 RAB18Q9NP72 206 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.92□□□□□ -1.46
VPS35-201ENST00000299138 LEUTXA8MZ59 168 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 C1QTNF3-AMACRE9PGA6 284 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 PMS2P2O95744 297 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 HLA-AP01891 365 aaKnown RBP5.92□□□□□ -1.46
VPS35-201ENST00000299138 MT-ND4LP03901 98 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 MMP7P09237 267 aaPredicted RBP5.92□□□□□ -1.46
VPS35-201ENST00000299138 ELNP15502 786 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 TAS2R38P59533 333 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 RPS24P62847 133 aaKnown RBP5.92□□□□□ -1.46
VPS35-201ENST00000299138 GABREP78334 506 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 ACKR1Q16570 336 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 PLPP4Q5VZY2 271 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 FAHD2BQ6P2I3 314 aaPredicted RBP5.92□□□□□ -1.46
VPS35-201ENST00000299138 DHRS13Q6UX07 377 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 SLC16A13Q7RTY0 426 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 PPP1R3BQ86XI6 285 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 CLECL1Q8IZS7 167 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 FAHD2AQ96GK7 314 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 ATF6BQ99941 703 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 NIPSNAP1Q9BPW8 284 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 NDUFS8O00217 210 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 SURF4O15260 269 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 NDUFS4O43181 175 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 GPR39O43194 453 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 CDC123O75794 336 aaPredicted RBP5.92□□□□□ -1.46
VPS35-201ENST00000299138 OLFM2O95897 454 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 IGF2P01344 180 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 GASTP01350 101 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 HBQ1P09105 142 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 STAG3L2P0CL84 134 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 NFYBP25208 207 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 PRSS3P35030 304 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 CTSOP43234 321 aaPredicted RBP5.92□□□□□ -1.46
VPS35-201ENST00000299138 PFN3P60673 137 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 LEXMQ3ZCV2 418 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 TMEM65Q6PI78 240 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 SLC35D2Q76EJ3 337 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 RNF141Q8WVD5 230 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 SCLYQ96I15 445 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 MEGF10Q96KG7 1140 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 ZNF587Q96SQ5 575 aaPredicted RBP5.92□□□□□ -1.46
VPS35-201ENST00000299138 ARV1Q9H2C2 271 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 CHST11Q9NPF2 352 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 ZDHHC4Q9NPG8 344 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 OR5V1Q9UGF6 321 aa5.92□□□□□ -1.46
VPS35-201ENST00000299138 RTCAO00442 366 aaKnown RBP5.91□□□□□ -1.46
VPS35-201ENST00000299138 PLPP2O43688 288 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 CRYABP02511 175 aaKnown RBP5.91□□□□□ -1.46
VPS35-201ENST00000299138 CNR1P21554 472 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 SEC61A1P61619 476 aaKnown RBP5.91□□□□□ -1.46
VPS35-201ENST00000299138 RPS13P62277 151 aaKnown RBP5.91□□□□□ -1.46
VPS35-201ENST00000299138 OC90Q02509 493 aaPredicted RBP5.91□□□□□ -1.46
VPS35-201ENST00000299138 ZNF90Q03938 601 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 TP53I3Q53FA7 332 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 PRSS36Q5K4E3 855 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 FAM180BQ6P0A1 224 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 CLRN3Q8NCR9 226 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 GCDHQ92947 438 aaPredicted RBP5.91□□□□□ -1.46
VPS35-201ENST00000299138 ANAPC16Q96DE5 110 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 CAPNS2Q96L46 248 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 MVB12BQ9H7P6 319 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 PTGES2Q9H7Z7 377 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 MRPL17Q9NRX2 175 aaKnown RBP5.91□□□□□ -1.46
VPS35-201ENST00000299138 B4GALT6Q9UBX8 382 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 CHRNA9Q9UGM1 479 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 FBXL4Q9UKA2 621 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 YIPF1Q9Y548 306 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 SCN9AQ15858 1988 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 LRRC37A2A6NM11 1700 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 B4DGG1 531 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 ZNF736B4DX44 427 aaPredicted RBP5.91□□□□□ -1.46
VPS35-201ENST00000299138 H7BYZ3 331 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 SCDO00767 359 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 GPR171O14626 319 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 B3GALT2O43825 422 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 RPLP1P05386 114 aaKnown RBP5.91□□□□□ -1.46
VPS35-201ENST00000299138 POU2F2P09086 479 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 FBXO45P0C2W1 286 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 LIMS3P0CW19 117 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 LIMS4P0CW20 117 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 SELPP16109 830 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 AKR1C3P42330 323 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 HBA1P69905 142 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 IL20RBQ6UXL0 311 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 TMPRSS11FQ6ZWK6 438 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 TMEM217Q8N7C4 229 aa5.91□□□□□ -1.46
VPS35-201ENST00000299138 SYNPRQ8TBG9 265 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms