RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 SUCLG1P53597 346 aaKnown RBP12.59□□□□□ -0.39
SS18-201ENST00000269137 BIDP55957 195 aa12.59□□□□□ -0.39
SS18-201ENST00000269137 BDH1Q02338 343 aa12.59□□□□□ -0.39
SS18-201ENST00000269137 HSF2Q03933 536 aa12.59□□□□□ -0.39
SS18-201ENST00000269137 SLC10A1Q14973 349 aa12.59□□□□□ -0.39
SS18-201ENST00000269137 BCL2A1Q16548 175 aa12.59□□□□□ -0.39
SS18-201ENST00000269137 DNM1P34Q6PK57 102 aa12.59□□□□□ -0.39
SS18-201ENST00000269137 IGFL3Q6UXB1 125 aa12.59□□□□□ -0.39
SS18-201ENST00000269137 WDFY1Q8IWB7 410 aa12.59□□□□□ -0.39
SS18-201ENST00000269137 SLC25A44Q96H78 314 aaPredicted RBP12.59□□□□□ -0.39
SS18-201ENST00000269137 ADAD1Q96M93 576 aaKnown RBP12.59□□□□□ -0.39
SS18-201ENST00000269137 MNTQ99583 582 aa12.59□□□□□ -0.39
SS18-201ENST00000269137 TBX5Q99593 518 aa12.59□□□□□ -0.39
SS18-201ENST00000269137 SH3GL3Q99963 347 aa12.59□□□□□ -0.39
SS18-201ENST00000269137 SF3B5Q9BWJ5 86 aaKnown RBP12.59□□□□□ -0.39
SS18-201ENST00000269137 TIGARQ9NQ88 270 aa12.59□□□□□ -0.39
SS18-201ENST00000269137 CSAG2Q9Y5P2 127 aa12.59□□□□□ -0.39
SS18-201ENST00000269137 LOC400499M0QZD8 3231 aa12.59□□□□□ -0.39
SS18-201ENST00000269137 URB1O60287 2271 aaKnown RBP12.58□□□□□ -0.39
SS18-201ENST00000269137 CENPBD1B2RD01 187 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 AKAP8O43823 692 aaKnown RBP12.58□□□□□ -0.4
SS18-201ENST00000269137 ENPP1P22413 925 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 SLC17A1Q14916 467 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 PDSS1Q5T2R2 415 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 EGFL6Q8IUX8 553 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 SYT14Q8NB59 555 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 OR10D3Q8NH80 312 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 SPRYD4Q8WW59 207 aaPredicted RBP12.58□□□□□ -0.4
SS18-201ENST00000269137 UCN2Q96RP3 112 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 ZDHHC11Q9H8X9 412 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 NDUFB11Q9NX14 153 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 BABAM2Q9NXR7 383 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 PCDHGA9Q9Y5G4 932 aaKnown RBP12.58□□□□□ -0.4
SS18-201ENST00000269137 SLC35F4A4IF30 521 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 SMAD9O15198 467 aaKnown RBP12.58□□□□□ -0.4
SS18-201ENST00000269137 SLC22A1O15245 554 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 IGHG1P01857 330 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 MT-ND5P03915 603 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 GADD45AP24522 165 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 CLDN18P56856 261 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 TIMM50Q3ZCQ8 353 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 THEM4Q5T1C6 240 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 LYPD4Q6UWN0 246 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 CREB3L2Q70SY1 520 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 TRILQ7L0X0 811 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 PHC2Q8IXK0 858 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 UBQLNLQ8IYU4 475 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 SYS1Q8N2H4 156 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 OR9K2Q8NGE7 335 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 FNDC8Q8TC99 324 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 SMAP2Q8WU79 429 aaPredicted RBP12.58□□□□□ -0.4
SS18-201ENST00000269137 MRPL48Q96GC5 212 aaKnown RBP12.58□□□□□ -0.4
SS18-201ENST00000269137 RBP7Q96R05 134 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 EMC6Q9BV81 110 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 SLC6A15Q9H2J7 730 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 RERGLQ9H628 205 aa12.58□□□□□ -0.4
SS18-201ENST00000269137 AIREO43918 545 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 CXCL13O43927 109 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 ACTL6AO96019 429 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 LALBAP00709 142 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 PGA4P0DJD7 388 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 PGA3P0DJD8 388 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 ZNF708P17019 499 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 PTGS2P35354 604 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 HCCSP53701 268 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 ACTA2P62736 377 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 ACTG2P63267 376 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 GLO1Q04760 184 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 AQP6Q13520 282 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 GPR50Q13585 617 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 CDONQ4KMG0 1287 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 RNFT1Q5M7Z0 435 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 LIPKQ5VXJ0 399 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 GDPGP1Q6ZNW5 385 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 SSX6Q7RTT6 188 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 SPACA3Q8IXA5 215 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 UFD1Q92890 307 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 CPNE4Q96A23 557 aaPredicted RBP12.57□□□□□ -0.4
SS18-201ENST00000269137 INTS14Q96SY0 518 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 ISG20L2Q9H9L3 353 aaKnown RBP12.57□□□□□ -0.4
SS18-201ENST00000269137 COPS3Q9UNS2 423 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 CFAP47Q6ZTR5 3102 aa12.57□□□□□ -0.4
SS18-201ENST00000269137 ANKRD11Q6UB99 2663 aaPredicted RBP12.56□□□□□ -0.4
SS18-201ENST00000269137 IGHV3-15A0A0B4J1V0 119 aa12.56□□□□□ -0.4
SS18-201ENST00000269137 TVP23AA6NH52 213 aa12.56□□□□□ -0.4
SS18-201ENST00000269137 ZNF726A6NNF4 738 aa12.56□□□□□ -0.4
SS18-201ENST00000269137 NPIPA2E9PIF3 369 aa12.56□□□□□ -0.4
SS18-201ENST00000269137 ZNF670-ZNF695F2Z2N8 137 aa12.56□□□□□ -0.4
SS18-201ENST00000269137 NPIPA3F8WFD2 350 aa12.56□□□□□ -0.4
SS18-201ENST00000269137 KHDRBS3O75525 346 aaKnown RBP12.56□□□□□ -0.4
SS18-201ENST00000269137 NR4A1P22736 598 aa12.56□□□□□ -0.4
SS18-201ENST00000269137 EIF1AXP47813 144 aaKnown RBP12.56□□□□□ -0.4
SS18-201ENST00000269137 NFATC3Q12968 1075 aa12.56□□□□□ -0.4
SS18-201ENST00000269137 ETFDHQ16134 617 aa12.56□□□□□ -0.4
SS18-201ENST00000269137 HIST3H3Q16695 136 aa12.56□□□□□ -0.4
SS18-201ENST00000269137 ABLIM2Q6H8Q1 611 aa12.56□□□□□ -0.4
SS18-201ENST00000269137 CDC20BQ86Y33 519 aa12.56□□□□□ -0.4
SS18-201ENST00000269137 ZADH2Q8N4Q0 377 aa12.56□□□□□ -0.4
SS18-201ENST00000269137 MEIOBQ8N635 442 aa12.56□□□□□ -0.4
SS18-201ENST00000269137 NOXO1Q8NFA2 376 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms