RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 OR5H15A6NDH6 313 aa10.46□□□□□ -0.74
VPS4A-201ENST00000254950 TMEM212A6NML5 194 aa10.46□□□□□ -0.74
VPS4A-201ENST00000254950 GATBO75879 557 aaKnown RBP10.46□□□□□ -0.74
VPS4A-201ENST00000254950 QDPRP09417 244 aa10.46□□□□□ -0.74
VPS4A-201ENST00000254950 CLUP10909 449 aa10.46□□□□□ -0.74
VPS4A-201ENST00000254950 FCGR2AP12318 317 aa10.46□□□□□ -0.74
VPS4A-201ENST00000254950 LIMS1P48059 325 aa10.46□□□□□ -0.74
VPS4A-201ENST00000254950 SLC25A1P53007 311 aa10.46□□□□□ -0.74
VPS4A-201ENST00000254950 RBPJQ06330 500 aa10.46□□□□□ -0.74
VPS4A-201ENST00000254950 C1QL3Q5VWW1 255 aa10.46□□□□□ -0.74
VPS4A-201ENST00000254950 TMEM53Q6P2H8 277 aa10.46□□□□□ -0.74
VPS4A-201ENST00000254950 VASH1Q7L8A9 365 aaPredicted RBP10.46□□□□□ -0.74
VPS4A-201ENST00000254950 PHC2Q8IXK0 858 aa10.46□□□□□ -0.74
VPS4A-201ENST00000254950 OR2M3Q8NG83 312 aa10.46□□□□□ -0.74
VPS4A-201ENST00000254950 FANCMQ8IYD8 2048 aa10.46□□□□□ -0.74
VPS4A-201ENST00000254950 FADS1O60427 444 aa10.46□□□□□ -0.74
VPS4A-201ENST00000254950 CBFA2T3O75081 653 aa10.46□□□□□ -0.74
VPS4A-201ENST00000254950 KDM4BO94953 1096 aa10.46□□□□□ -0.74
VPS4A-201ENST00000254950 TGFBR2P37173 567 aa10.46□□□□□ -0.74
VPS4A-201ENST00000254950 SNRPNP63162 240 aaKnown RBP10.46□□□□□ -0.74
VPS4A-201ENST00000254950 C9orf135Q5VTT2 229 aa10.46□□□□□ -0.74
VPS4A-201ENST00000254950 SPINK14Q6IE38 97 aa10.46□□□□□ -0.74
VPS4A-201ENST00000254950 ZNF813Q6ZN06 617 aa10.46□□□□□ -0.74
VPS4A-201ENST00000254950 ZNF627Q7L945 461 aa10.46□□□□□ -0.74
VPS4A-201ENST00000254950 FTMTQ8N4E7 242 aa10.46□□□□□ -0.74
VPS4A-201ENST00000254950 HOXB13Q92826 284 aaPredicted RBP10.46□□□□□ -0.74
VPS4A-201ENST00000254950 SLC25A44Q96H78 314 aaPredicted RBP10.46□□□□□ -0.74
VPS4A-201ENST00000254950 B9D1Q9UPM9 204 aa10.46□□□□□ -0.74
VPS4A-201ENST00000254950 IQCMA0A1B0GVH7 501 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 VSTM5A8MXK1 200 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 ZNF587BE7ETH6 402 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 SNPHO15079 494 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 LRRTM2O43300 516 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 TPOP07202 933 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 AADACL4Q5VUY2 407 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 LIPNQ5VXI9 398 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 PEAR1Q5VY43 1037 aaPredicted RBP10.45□□□□□ -0.74
VPS4A-201ENST00000254950 DCXRQ7Z4W1 244 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 SYS1Q8N2H4 156 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 LRRC18Q8N456 261 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 CPNE4Q96A23 557 aaPredicted RBP10.45□□□□□ -0.74
VPS4A-201ENST00000254950 CENPOQ9BU64 300 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 FAM117AQ9C073 453 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 OR10A2Q9H208 303 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 ISYNA1Q9NPH2 558 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 NRIP3Q9NQ35 241 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 FOXJ2Q9P0K8 574 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 SLC7A11Q9UPY5 501 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 SDK2Q58EX2 2172 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 ZIC2O95409 532 aaPredicted RBP10.45□□□□□ -0.74
VPS4A-201ENST00000254950 IFNA6P05013 189 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 GSTT2BP0CG30 244 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 STARP49675 285 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 MEOX1P50221 254 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 APOOLQ6UXV4 268 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 PPP1R32Q7Z5V6 425 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 GTPBP8Q8N3Z3 284 aaPredicted RBP10.45□□□□□ -0.74
VPS4A-201ENST00000254950 APH1AQ96BI3 265 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 ARL5BQ96KC2 179 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 CDH20Q9HBT6 801 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 TXNL4BQ9NX01 149 aaKnown RBP10.45□□□□□ -0.74
VPS4A-201ENST00000254950 CCDC59Q9P031 241 aaKnown RBP10.45□□□□□ -0.74
VPS4A-201ENST00000254950 EIF3KQ9UBQ5 218 aaKnown RBP10.45□□□□□ -0.74
VPS4A-201ENST00000254950 AK6Q9Y3D8 172 aaKnown RBP10.45□□□□□ -0.74
VPS4A-201ENST00000254950 PLXNB3Q9ULL4 1909 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 IGHV3-15A0A0B4J1V0 119 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 FOXK1P85037 733 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 ALKBH1Q13686 389 aaKnown RBP10.45□□□□□ -0.74
VPS4A-201ENST00000254950 TGIF1Q15583 401 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 WDR88Q6ZMY6 472 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 SNX29P2Q8IUI4 249 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 TEX19Q8NA77 164 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 PPP1R14AQ96A00 147 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 TSPAN10Q9H1Z9 355 aaPredicted RBP10.45□□□□□ -0.74
VPS4A-201ENST00000254950 PCDHB16Q9NRJ7 776 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 GRIP1Q9Y3R0 1128 aa10.45□□□□□ -0.74
VPS4A-201ENST00000254950 TRGV5A0A0B4J1U4 118 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 TRDV1A0A1B0GX56 115 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 NPIPB9F8W1W9 429 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 TAF4O00268 1085 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 CEACAM1P13688 526 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 CAPZA1P52907 286 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 FAM180AQ6UWF9 173 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 FCRLAQ7L513 359 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 TPRA1Q86W33 373 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 GJC3Q8NFK1 279 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 ABHD4Q8TB40 342 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 APH1BQ8WW43 257 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 NKIRAS2Q9NYR9 191 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 FBXL2Q9UKC9 423 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 OR6C65A6NJZ3 312 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 PLPP3O14495 311 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 DHFRP00374 187 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 CSRP1P21291 193 aaKnown RBP10.44□□□□□ -0.74
VPS4A-201ENST00000254950 LAP3P28838 519 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 ARFRP1Q13795 201 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 TSEN54Q7Z6J9 526 aaKnown RBP10.44□□□□□ -0.74
VPS4A-201ENST00000254950 IL17BQ9UHF5 180 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 ACACAQ13085 2346 aa10.44□□□□□ -0.74
VPS4A-201ENST00000254950 BHLHE40O14503 412 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms