RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 FCER1AP12319 257 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 HGFP14210 728 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 OR3A4PP47883 348 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 TAF6P49848 677 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 IKZF1Q13422 519 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 CTSL3PQ5NE16 218 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 TAPT1Q6NXT6 567 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 NHLRC1Q6VVB1 395 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 NUFIP2Q7Z417 695 aaKnown RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 BVESQ8NE79 360 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 NDUFAF3Q9BU61 184 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 MAP1LC3BQ9GZQ8 125 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 SLC25A32Q9H2D1 315 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 SSUH2Q9Y2M2 353 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 MSRB2Q9Y3D2 182 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM94Q12767 1356 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 PTCH1Q13635 1447 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 SSU72P8A0A1W2PR75 194 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 RFXAPO00287 272 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 TMPRSS2O15393 492 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 APOA2P02652 100 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ADORA2AP29274 412 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 TEAD2Q15562 447 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 KCNMB1Q16558 191 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 OR10J3Q5JRS4 329 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 CYP2R1Q6VVX0 501 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF485Q8NCK3 441 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 PKMYT1Q99640 499 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM38AQ9H6F2 299 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 GBA2Q9HCG7 927 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 JKAMPQ9P055 326 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 SLC22A13Q9Y226 551 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 SGPL1O95470 568 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 TSPAN12O95859 305 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 TTRP02766 147 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 PNLIPP16233 465 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ACOT6Q3I5F7 207 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 H3F3CQ6NXT2 135 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 TRMT10BQ6PF06 316 aaKnown RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ATRAIDQ6UW56 229 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 FA2HQ7L5A8 372 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 SLC16A11Q8NCK7 471 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF331Q9NQX6 463 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 FBXW11Q9UKB1 542 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 CDC42EP3Q9UKI2 254 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 IGLON5A6NGN9 336 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 D6RAR5 112 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF749O43361 778 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 SELENOFO60613 162 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 CDRT1O95170 752 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 SMIM18P0DKX4 95 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 GABRR1P24046 479 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 TMBIM6P55061 237 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 UGCGQ16739 394 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 TPRG1Q6ZUI0 275 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 SENP5Q96HI0 755 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 HRASLSQ9HDD0 168 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ANK1P16157 1881 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 RUSC2Q8N2Y8 1516 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 TRAV25A0A0B4J276 109 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 GALR2O43603 387 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ICOSLGO75144 302 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 CEACAM4O75871 244 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 GPD1P21695 349 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ACHEP22303 614 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 TNFSF10P50591 281 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 NDUFA8P51970 172 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 CRMP1Q14194 572 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 GPR19Q15760 415 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 C18orf21Q32NC0 220 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 LAPTM4BQ86VI4 370 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 DNAJC5GQ8N7S2 189 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 EEF1AKMT3Q96AZ1 226 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 FLYWCH2Q96CP2 140 aaKnown RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM160Q9NX00 188 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 RALGAPA2Q2PPJ7 1873 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 C9J4A7 227 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 OR1F1O43749 312 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 MAPTP10636 758 aaKnown RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 TIMP2P16035 220 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 RCC1P18754 421 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 AMTP48728 403 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 RTP5Q14D33 572 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM176BQ3YBM2 270 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 CHADLQ6NUI6 762 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 SV2AQ7L0J3 742 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 PIGZQ86VD9 579 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 NIT1Q86X76 327 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 FBXO11Q86XK2 927 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 NAXDQ8IW45 347 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 FAM222BQ8WU58 562 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 FKBP10Q96AY3 582 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 SIGLEC11Q96RL6 698 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 JMJD8Q96S16 334 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 BPIFA1Q9NP55 256 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 KCNJ16Q9NPI9 418 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 FLRT3Q9NZU0 649 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 PLEKHB1Q9UF11 243 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 PLXNA4Q9HCM2 1894 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms