RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	KCNK17	Q96T54	332 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	TIMP4	Q99727	224 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	TUBA1C	Q9BQE3	449 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	ALG12	Q9BV10	488 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	JAM3	Q9BX67	310 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	ACOT13	Q9NPJ3	140 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	CHCHD3	Q9NX63	227 aa	Known RBP	10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	MED29	Q9NX70	200 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	NDUFA13	Q9P0J0	144 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	TP53TG5	Q9Y2B4	290 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	EXOSC1	Q9Y3B2	195 aa	Known RBP	10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	LIPG	Q9Y5X9	500 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	FKBP7	Q9Y680	259 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	COMMD3-BMI1	R4GMX3	469 aa		10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	PHF3	Q92576	2039 aa	Known RBP	10.5	□□□□□ -0.73
CLN6-223	ENST00000637823	SLC35F4	A4IF30	521 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	TMEM8B	A6NDV4	472 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	ZNF99	A8MXY4	864 aa	Predicted RBP	10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	CENPBD1	B2RD01	187 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823		H7C1C5	153 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823		J3QRE1	110 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	CYTIP	O60759	359 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	IGHA1	P01876	353 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	CRYAB	P02511	175 aa	Known RBP	10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	MYL12A	P19105	171 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	KLK2	P20151	261 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	CRABP1	P29762	137 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	TTK	P33981	857 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	BLVRA	P53004	296 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	CLDN17	P56750	224 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	LCN6	P62502	163 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	RUNX1T1	Q06455	604 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	TBCE	Q15813	527 aa	Predicted RBP	10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	NADK2	Q4G0N4	442 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	THEM4	Q5T1C6	240 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	UBE2U	Q5VVX9	321 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	B3GLCT	Q6Y288	498 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	FCRLA	Q7L513	359 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	CHMP1B	Q7LBR1	199 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	SIAH3	Q8IW03	269 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	OR6V1	Q8N148	313 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	NANOGP1	Q8N7R0	232 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	POMGNT2	Q8NAT1	580 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	PROKR2	Q8NFJ6	384 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	OR4F15	Q8NGB8	312 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	OR51G2	Q8NGK0	314 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	FNDC8	Q8TC99	324 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	ZCCHC14	Q8WYQ9	949 aa	Known RBP	10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	ROBO4	Q8WZ75	1007 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	RORB	Q92753	470 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	MUL1	Q969V5	352 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	ZMYND19	Q96E35	227 aa	Predicted RBP	10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	WDYHV1	Q96HA8	205 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	RBP7	Q96R05	134 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	TAAR6	Q96RI8	345 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	MRPL13	Q9BYD1	178 aa	Known RBP	10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	NUAK2	Q9H093	628 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	SYT4	Q9H2B2	425 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	PLSCR2	Q9NRY7	297 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	KLHL13	Q9P2N7	655 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	SPRR3	Q9UBC9	169 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	TUBD1	Q9UJT1	453 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	MCTS1	Q9ULC4	181 aa	Known RBP	10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	B9D1	Q9UPM9	204 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	ERGIC3	Q9Y282	383 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	MGA	Q8IWI9	3026 aa		10.49	□□□□□ -0.73
CLN6-223	ENST00000637823	ZNF716	A6NP11	495 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	AQP7	O14520	342 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	AKAP8	O43823	692 aa	Known RBP	10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	SLC16A7	O60669	478 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	IGHG1	P01857	330 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	ADRA2A	P08913	450 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	SBK2	P0C263	348 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	PYCR1	P32322	319 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	ETV1	P50549	477 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	CLRN1	P58418	232 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	RASGEF1B	Q0VAM2	473 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	LINC01590	Q5TEZ4	76 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	ABLIM2	Q6H8Q1	611 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	DNM1P34	Q6PK57	102 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	GPR141	Q7Z602	305 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	SATL1	Q86VE3	508 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	ACBD7	Q8N6N7	88 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	ZIC4	Q8N9L1	334 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	SYT14	Q8NB59	555 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	OR51L1	Q8NGJ5	315 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	OR6K6	Q8NGW6	343 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	ZNRF4	Q8WWF5	429 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	INTS12	Q96CB8	462 aa	Known RBP	10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	ZNF845	Q96IR2	970 aa	Predicted RBP	10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	TSSK2	Q96PF2	358 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	EMC6	Q9BV81	110 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	MND1	Q9BWT6	205 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	ADGRL4	Q9HBW9	690 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	INPP5E	Q9NRR6	644 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	LHX6	Q9UPM6	363 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	CAMK2A	Q9UQM7	478 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	MED12L	Q86YW9	2145 aa		10.48	□□□□□ -0.73
CLN6-223	ENST00000637823	IGF2R	P11717	2491 aa		10.47	□□□□□ -0.73
CLN6-223	ENST00000637823	LOC400499	M0QZD8	3231 aa		10.47	□□□□□ -0.73

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