RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 ZNF169Q14929 603 aaPredicted RBP16.44■□□□□ 0.22
CLN3-254ENST00000637050 ZNF367Q7RTV3 350 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 ZBTB46Q86UZ6 589 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 POMGNT2Q8NAT1 580 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 ABTB1Q969K4 478 aaPredicted RBP16.44■□□□□ 0.22
CLN3-254ENST00000637050 ITFG2Q969R8 447 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 ZNF649Q9BS31 505 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 MND1Q9BWT6 205 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 NUAK2Q9H093 628 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 DEFB127Q9H1M4 99 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 SRA1Q9HD15 236 aaKnown RBP16.44■□□□□ 0.22
CLN3-254ENST00000637050 LIPGQ9Y5X9 500 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 FKBP7Q9Y680 259 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 CEPT1Q9Y6K0 416 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 ZFHX4Q86UP3 3567 aa16.44■□□□□ 0.22
CLN3-254ENST00000637050 MKRN2OSH3BPM6 223 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 H3BSA7 217 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 TRMUO75648 421 aaKnown RBP16.43■□□□□ 0.22
CLN3-254ENST00000637050 PSMB9P28065 219 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 EIF1AXP47813 144 aaKnown RBP16.43■□□□□ 0.22
CLN3-254ENST00000637050 UCNP55089 124 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 SLC17A1Q14916 467 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 VASNQ6EMK4 673 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 LRRC69Q6ZNQ3 347 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 Q6ZS92 163 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 HDDC2Q7Z4H3 204 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 ACBD7Q8N6N7 88 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 CPNE4Q96A23 557 aaPredicted RBP16.43■□□□□ 0.22
CLN3-254ENST00000637050 COG8Q96MW5 612 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 OR5M11Q96RB7 305 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 SF3B5Q9BWJ5 86 aaKnown RBP16.43■□□□□ 0.22
CLN3-254ENST00000637050 MRPL13Q9BYD1 178 aaKnown RBP16.43■□□□□ 0.22
CLN3-254ENST00000637050 TIGARQ9NQ88 270 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 CHCHD3Q9NX63 227 aaKnown RBP16.43■□□□□ 0.22
CLN3-254ENST00000637050 KLHL13Q9P2N7 655 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 RAXQ9Y2V3 346 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 TNRC6AQ8NDV7 1962 aaKnown RBP16.43■□□□□ 0.22
CLN3-254ENST00000637050 KIAA1549Q9HCM3 1950 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 TRGV5A0A0B4J1U4 118 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 TMEM129A0AVI4 362 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 MRPL3P09001 348 aaKnown RBP16.43■□□□□ 0.22
CLN3-254ENST00000637050 ZNF24P17028 368 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 PLA2G5P39877 138 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 TMPRSS3P57727 454 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 TBR1Q16650 682 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 OR6K6Q8NGW6 343 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 OR6X1Q8NH79 312 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 CNN2Q99439 309 aaKnown RBP16.43■□□□□ 0.22
CLN3-254ENST00000637050 EMC6Q9BV81 110 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 INPP5EQ9NRR6 644 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 ERVK13-1Q9NX77 482 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 B9D1Q9UPM9 204 aa16.43■□□□□ 0.22
CLN3-254ENST00000637050 APC2O95996 2303 aa16.42■□□□□ 0.22
CLN3-254ENST00000637050 LOC400499M0QZD8 3231 aa16.42■□□□□ 0.22
CLN3-254ENST00000637050 IGLV1-36A0A0B4J1U3 117 aa16.42■□□□□ 0.22
CLN3-254ENST00000637050 C12orf71A8MTZ7 269 aa16.42■□□□□ 0.22
CLN3-254ENST00000637050 FAM171A2A8MVW0 826 aa16.42■□□□□ 0.22
CLN3-254ENST00000637050 K7EM74 188 aa16.42■□□□□ 0.22
CLN3-254ENST00000637050 TFECO14948 347 aaPredicted RBP16.42■□□□□ 0.22
CLN3-254ENST00000637050 MYL12BO14950 172 aa16.42■□□□□ 0.22
CLN3-254ENST00000637050 IGHG3P01860 377 aa16.42■□□□□ 0.22
CLN3-254ENST00000637050 DOC2BQ14184 412 aa16.42■□□□□ 0.22
CLN3-254ENST00000637050 TIGD6Q17RP2 521 aa16.42■□□□□ 0.22
CLN3-254ENST00000637050 CREB3L2Q70SY1 520 aa16.42■□□□□ 0.22
CLN3-254ENST00000637050 LHFPL3Q86UP9 236 aa16.42■□□□□ 0.22
CLN3-254ENST00000637050 MEIOBQ8N635 442 aa16.42■□□□□ 0.22
CLN3-254ENST00000637050 OR9K2Q8NGE7 335 aa16.42■□□□□ 0.22
CLN3-254ENST00000637050 DGCR14Q96DF8 476 aaKnown RBP16.42■□□□□ 0.22
CLN3-254ENST00000637050 SLC25A44Q96H78 314 aaPredicted RBP16.42■□□□□ 0.22
CLN3-254ENST00000637050 ADAD1Q96M93 576 aaKnown RBP16.42■□□□□ 0.22
CLN3-254ENST00000637050 LDAHQ9H6V9 325 aa16.42■□□□□ 0.22
CLN3-254ENST00000637050 CFAP47Q6ZTR5 3102 aa16.42■□□□□ 0.22
CLN3-254ENST00000637050 SLC35F4A4IF30 521 aa16.41■□□□□ 0.22
CLN3-254ENST00000637050 SLC16A7O60669 478 aa16.41■□□□□ 0.22
CLN3-254ENST00000637050 TFP02787 698 aa16.41■□□□□ 0.22
CLN3-254ENST00000637050 CTLA4P16410 223 aa16.41■□□□□ 0.22
CLN3-254ENST00000637050 CRABP1P29762 137 aa16.41■□□□□ 0.22
CLN3-254ENST00000637050 ACTC1P68032 377 aa16.41■□□□□ 0.22
CLN3-254ENST00000637050 ACTA1P68133 377 aa16.41■□□□□ 0.22
CLN3-254ENST00000637050 SPHARQ15513 63 aa16.41■□□□□ 0.22
CLN3-254ENST00000637050 MED22Q15528 200 aa16.41■□□□□ 0.22
CLN3-254ENST00000637050 ABLIM2Q6H8Q1 611 aa16.41■□□□□ 0.22
CLN3-254ENST00000637050 LYPD4Q6UWN0 246 aa16.41■□□□□ 0.22
CLN3-254ENST00000637050 RBMXL3Q8N7X1 1067 aaKnown RBP16.41■□□□□ 0.22
CLN3-254ENST00000637050 SYT14Q8NB59 555 aa16.41■□□□□ 0.22
CLN3-254ENST00000637050 SNRNP27Q8WVK2 155 aaKnown RBP16.41■□□□□ 0.22
CLN3-254ENST00000637050 ZNF845Q96IR2 970 aaPredicted RBP16.41■□□□□ 0.22
CLN3-254ENST00000637050 RACGAP1Q9H0H5 632 aa16.41■□□□□ 0.22
CLN3-254ENST00000637050 NPIPA2E9PIF3 369 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 NPIPA3F8WFD2 350 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 SELENOFO60613 162 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 IGHG1P01857 330 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 PGA4P0DJD7 388 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 PGA3P0DJD8 388 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 CENPAP49450 140 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 WNT4P56705 351 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 CLDN17P56750 224 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 SRYQ05066 204 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 GPR107Q5VW38 600 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 CLVS1Q8IUQ0 354 aaPredicted RBP16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms