RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 C1DQ13901 141 aaKnown RBP17.93■□□□□ 0.46
CLN3-250ENST00000636839 MED22Q15528 200 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 ZNF239Q16600 458 aaKnown RBP17.93■□□□□ 0.46
CLN3-250ENST00000636839 CARD17Q5XLA6 110 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 IGFL3Q6UXB1 125 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 PROKR2Q8NFJ6 384 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 OR10H4Q8NGA5 316 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 TTTY10Q9BZA0 68 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 ZDHHC11Q9H8X9 412 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 ACKR4Q9NPB9 350 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 SPRR3Q9UBC9 169 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 LSM2Q9Y333 95 aaKnown RBP17.93■□□□□ 0.46
CLN3-250ENST00000636839 ZZEF1O43149 2961 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 SLC35F4A4IF30 521 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 C12orf71A8MTZ7 269 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 SLC16A7O60669 478 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 TRMUO75648 421 aaKnown RBP17.93■□□□□ 0.46
CLN3-250ENST00000636839 RENP00797 406 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 NR4A1P22736 598 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 TBR1Q16650 682 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 SYT6Q5T7P8 510 aaPredicted RBP17.93■□□□□ 0.46
CLN3-250ENST00000636839 EEF1A1P5Q5VTE0 462 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 BORAQ6PGQ7 559 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 CLVS1Q8IUQ0 354 aaPredicted RBP17.93■□□□□ 0.46
CLN3-250ENST00000636839 NANOGP1Q8N7R0 232 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 ABTB1Q969K4 478 aaPredicted RBP17.93■□□□□ 0.46
CLN3-250ENST00000636839 FAM122AQ96E09 287 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 ABHD17AQ96GS6 310 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 ZNF385AQ96PM9 386 aaKnown RBP17.93■□□□□ 0.46
CLN3-250ENST00000636839 TAAR6Q96RI8 345 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 TIMP4Q99727 224 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 VSX1Q9NZR4 365 aaPredicted RBP17.93■□□□□ 0.46
CLN3-250ENST00000636839 PCDHGA9Q9Y5G4 932 aaKnown RBP17.93■□□□□ 0.46
CLN3-250ENST00000636839 NOX1Q9Y5S8 564 aa17.93■□□□□ 0.46
CLN3-250ENST00000636839 PTPRQQ9UMZ3 2332 aa17.92■□□□□ 0.46
CLN3-250ENST00000636839 CCDC160A6NGH7 325 aa17.92■□□□□ 0.46
CLN3-250ENST00000636839 ACOT7O00154 380 aa17.92■□□□□ 0.46
CLN3-250ENST00000636839 IGHA1P01876 353 aa17.92■□□□□ 0.46
CLN3-250ENST00000636839 ZNF708P17019 499 aa17.92■□□□□ 0.46
CLN3-250ENST00000636839 ZNF43P17038 809 aa17.92■□□□□ 0.46
CLN3-250ENST00000636839 LIPAP38571 399 aa17.92■□□□□ 0.46
CLN3-250ENST00000636839 DAP3P51398 398 aaKnown RBP17.92■□□□□ 0.46
CLN3-250ENST00000636839 GTF2A1P52655 376 aaPredicted RBP17.92■□□□□ 0.46
CLN3-250ENST00000636839 ADCK1Q86TW2 530 aa17.92■□□□□ 0.46
CLN3-250ENST00000636839 RBMXL3Q8N7X1 1067 aaKnown RBP17.92■□□□□ 0.46
CLN3-250ENST00000636839 KCNK17Q96T54 332 aa17.92■□□□□ 0.46
CLN3-250ENST00000636839 LDAHQ9H6V9 325 aa17.92■□□□□ 0.46
CLN3-250ENST00000636839 HAO2Q9NYQ3 351 aa17.92■□□□□ 0.46
CLN3-250ENST00000636839 B9D1Q9UPM9 204 aa17.92■□□□□ 0.46
CLN3-250ENST00000636839 ERGIC3Q9Y282 383 aa17.92■□□□□ 0.46
CLN3-250ENST00000636839 BSNQ9UPA5 3926 aa17.92■□□□□ 0.46
CLN3-250ENST00000636839 MAGEB4O15481 346 aaPredicted RBP17.91■□□□□ 0.46
CLN3-250ENST00000636839 EIF1BO60739 113 aaKnown RBP17.91■□□□□ 0.46
CLN3-250ENST00000636839 GLCEO94923 617 aa17.91■□□□□ 0.46
CLN3-250ENST00000636839 ZNF24P17028 368 aa17.91■□□□□ 0.46
CLN3-250ENST00000636839 NTF4P34130 210 aa17.91■□□□□ 0.46
CLN3-250ENST00000636839 RPS27P42677 84 aaKnown RBP17.91■□□□□ 0.46
CLN3-250ENST00000636839 SLC17A1Q14916 467 aa17.91■□□□□ 0.46
CLN3-250ENST00000636839 ZNF169Q14929 603 aaPredicted RBP17.91■□□□□ 0.46
CLN3-250ENST00000636839 SSX6Q7RTT6 188 aa17.91■□□□□ 0.46
CLN3-250ENST00000636839 NEIL3Q8TAT5 605 aa17.91■□□□□ 0.46
CLN3-250ENST00000636839 GATAD2BQ8WXI9 593 aa17.91■□□□□ 0.46
CLN3-250ENST00000636839 EXO5Q9H790 373 aa17.91■□□□□ 0.46
CLN3-250ENST00000636839 ERVK13-1Q9NX77 482 aa17.91■□□□□ 0.46
CLN3-250ENST00000636839 CHD8Q9HCK8 2581 aa17.91■□□□□ 0.46
CLN3-250ENST00000636839 TFECO14948 347 aaPredicted RBP17.91■□□□□ 0.46
CLN3-250ENST00000636839 PSKH1P11801 424 aa17.91■□□□□ 0.46
CLN3-250ENST00000636839 MYL12AP19105 171 aa17.91■□□□□ 0.46
CLN3-250ENST00000636839 CLDN17P56750 224 aa17.91■□□□□ 0.46
CLN3-250ENST00000636839 TIGD6Q17RP2 521 aa17.91■□□□□ 0.46
CLN3-250ENST00000636839 CREB3L2Q70SY1 520 aa17.91■□□□□ 0.46
CLN3-250ENST00000636839 ZSCAN2Q7Z7L9 614 aaPredicted RBP17.91■□□□□ 0.46
CLN3-250ENST00000636839 ZIC4Q8N9L1 334 aa17.91■□□□□ 0.46
CLN3-250ENST00000636839 OR9K2Q8NGE7 335 aa17.91■□□□□ 0.46
CLN3-250ENST00000636839 OR2T4Q8NH00 348 aa17.91■□□□□ 0.46
CLN3-250ENST00000636839 TUBA1CQ9BQE3 449 aa17.91■□□□□ 0.46
CLN3-250ENST00000636839 NAA11Q9BSU3 229 aaPredicted RBP17.91■□□□□ 0.46
CLN3-250ENST00000636839 WDR76Q9H967 626 aa17.91■□□□□ 0.46
CLN3-250ENST00000636839 ISG20L2Q9H9L3 353 aaKnown RBP17.91■□□□□ 0.46
CLN3-250ENST00000636839 QPCTLQ9NXS2 382 aa17.91■□□□□ 0.46
CLN3-250ENST00000636839 RASD1Q9Y272 281 aa17.91■□□□□ 0.46
CLN3-250ENST00000636839 TRGV5A0A0B4J1U4 118 aa17.9■□□□□ 0.46
CLN3-250ENST00000636839 SMIM31A0A1B0GVY4 71 aa17.9■□□□□ 0.46
CLN3-250ENST00000636839 A0A1W2PQL4 384 aaPredicted RBP17.9■□□□□ 0.46
CLN3-250ENST00000636839 MPZL1O95297 269 aa17.9■□□□□ 0.46
CLN3-250ENST00000636839 CENPAP49450 140 aa17.9■□□□□ 0.46
CLN3-250ENST00000636839 LGALS3BPQ08380 585 aa17.9■□□□□ 0.46
CLN3-250ENST00000636839 VASNQ6EMK4 673 aa17.9■□□□□ 0.46
CLN3-250ENST00000636839 C9orf43Q8TAL5 461 aaPredicted RBP17.9■□□□□ 0.46
CLN3-250ENST00000636839 MRPL13Q9BYD1 178 aaKnown RBP17.9■□□□□ 0.46
CLN3-250ENST00000636839 COPS3Q9UNS2 423 aa17.9■□□□□ 0.46
CLN3-250ENST00000636839 PIEZO2Q9H5I5 2752 aa17.9■□□□□ 0.46
CLN3-250ENST00000636839 IGLV1-36A0A0B4J1U3 117 aa17.89■□□□□ 0.46
CLN3-250ENST00000636839 LOC102725191A0A1B0GVB3 256 aa17.89■□□□□ 0.46
CLN3-250ENST00000636839 NPIPB13A6NJU9 1138 aa17.89■□□□□ 0.46
CLN3-250ENST00000636839 NPIPB4C9JG80 1138 aa17.89■□□□□ 0.46
CLN3-250ENST00000636839 LINC01387J3KSC0 135 aa17.89■□□□□ 0.46
CLN3-250ENST00000636839 ZNF85Q03923 595 aa17.89■□□□□ 0.46
CLN3-250ENST00000636839 GGTLC2Q14390 218 aa17.89■□□□□ 0.46
CLN3-250ENST00000636839 SPHARQ15513 63 aa17.89■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms