RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ZCCHC23Q6ZST2 131 aa12.2□□□□□ -0.46
CLN3-249ENST00000636685 SKA3Q8IX90 412 aa12.2□□□□□ -0.46
CLN3-249ENST00000636685 DDIASQ8IXT1 998 aa12.2□□□□□ -0.46
CLN3-249ENST00000636685 KLHL36Q8N4N3 616 aa12.2□□□□□ -0.46
CLN3-249ENST00000636685 SPICQ8N5J4 248 aa12.2□□□□□ -0.46
CLN3-249ENST00000636685 TMEM86BQ8N661 226 aa12.2□□□□□ -0.46
CLN3-249ENST00000636685 ANKFN1Q8N957 763 aa12.2□□□□□ -0.46
CLN3-249ENST00000636685 GEMIN6Q8WXD5 167 aaKnown RBP12.2□□□□□ -0.46
CLN3-249ENST00000636685 NEURL3Q96EH8 262 aa12.2□□□□□ -0.46
CLN3-249ENST00000636685 EMC6Q9BV81 110 aa12.2□□□□□ -0.46
CLN3-249ENST00000636685 CDH20Q9HBT6 801 aa12.2□□□□□ -0.46
CLN3-249ENST00000636685 NOX4Q9NPH5 578 aa12.2□□□□□ -0.46
CLN3-249ENST00000636685 AURKAIP1Q9NWT8 199 aaPredicted RBP12.2□□□□□ -0.46
CLN3-249ENST00000636685 DNAJC15Q9Y5T4 150 aa12.2□□□□□ -0.46
CLN3-249ENST00000636685 F5H0A9 414 aaPredicted RBP12.19□□□□□ -0.46
CLN3-249ENST00000636685 AKAP8O43823 692 aaKnown RBP12.19□□□□□ -0.46
CLN3-249ENST00000636685 PEX11AO75192 247 aa12.19□□□□□ -0.46
CLN3-249ENST00000636685 LYPLA1O75608 230 aaPredicted RBP12.19□□□□□ -0.46
CLN3-249ENST00000636685 IGHV3-13P01766 116 aa12.19□□□□□ -0.46
CLN3-249ENST00000636685 C1QCP02747 245 aa12.19□□□□□ -0.46
CLN3-249ENST00000636685 MAPK1P28482 360 aa12.19□□□□□ -0.46
CLN3-249ENST00000636685 ACAA2P42765 397 aaKnown RBP12.19□□□□□ -0.46
CLN3-249ENST00000636685 UCP2P55851 309 aa12.19□□□□□ -0.46
CLN3-249ENST00000636685 SLC7A5Q01650 507 aa12.19□□□□□ -0.46
CLN3-249ENST00000636685 PAX2Q02962 417 aa12.19□□□□□ -0.46
CLN3-249ENST00000636685 SYPL1Q16563 259 aa12.19□□□□□ -0.46
CLN3-249ENST00000636685 MOGQ16653 247 aa12.19□□□□□ -0.46
CLN3-249ENST00000636685 PGS1Q32NB8 556 aa12.19□□□□□ -0.46
CLN3-249ENST00000636685 ESCO2Q56NI9 601 aa12.19□□□□□ -0.46
CLN3-249ENST00000636685 TMEM255AQ5JRV8 349 aa12.19□□□□□ -0.46
CLN3-249ENST00000636685 WBP2NLQ6ICG8 309 aa12.19□□□□□ -0.46
CLN3-249ENST00000636685 OR4F3Q6IEY1 312 aa12.19□□□□□ -0.46
CLN3-249ENST00000636685 CCBE1Q6UXH8 406 aaPredicted RBP12.19□□□□□ -0.46
CLN3-249ENST00000636685 RIMKLAQ8IXN7 391 aa12.19□□□□□ -0.46
CLN3-249ENST00000636685 POU5F2Q8N7G0 328 aa12.19□□□□□ -0.46
CLN3-249ENST00000636685 OR4A15Q8NGL6 344 aa12.19□□□□□ -0.46
CLN3-249ENST00000636685 STK35Q8TDR2 534 aa12.19□□□□□ -0.46
CLN3-249ENST00000636685 SLC47A1Q96FL8 570 aa12.19□□□□□ -0.46
CLN3-249ENST00000636685 FOXB1Q99853 325 aa12.19□□□□□ -0.46
CLN3-249ENST00000636685 SLC38A1Q9H2H9 487 aa12.19□□□□□ -0.46
CLN3-249ENST00000636685 SACSQ9NZJ4 4579 aa12.19□□□□□ -0.46
CLN3-249ENST00000636685 ZSCAN5BA6NJL1 495 aa12.18□□□□□ -0.46
CLN3-249ENST00000636685 TMEM233B4DJY2 109 aa12.18□□□□□ -0.46
CLN3-249ENST00000636685 M0R082 166 aa12.18□□□□□ -0.46
CLN3-249ENST00000636685 GPR137BO60478 399 aa12.18□□□□□ -0.46
CLN3-249ENST00000636685 TGDSO95455 350 aa12.18□□□□□ -0.46
CLN3-249ENST00000636685 CHEK2O96017 543 aa12.18□□□□□ -0.46
CLN3-249ENST00000636685 HLA-DOBP13765 273 aa12.18□□□□□ -0.46
CLN3-249ENST00000636685 IL7RP16871 459 aa12.18□□□□□ -0.46
CLN3-249ENST00000636685 RPS4Y1P22090 263 aaKnown RBP12.18□□□□□ -0.46
CLN3-249ENST00000636685 GCAP28676 217 aa12.18□□□□□ -0.46
CLN3-249ENST00000636685 MMP15P51511 669 aa12.18□□□□□ -0.46
CLN3-249ENST00000636685 DNAJB13P59910 316 aa12.18□□□□□ -0.46
CLN3-249ENST00000636685 EGR4Q05215 589 aa12.18□□□□□ -0.46
CLN3-249ENST00000636685 IL23RQ5VWK5 629 aa12.18□□□□□ -0.46
CLN3-249ENST00000636685 KANK2Q63ZY3 851 aa12.18□□□□□ -0.46
CLN3-249ENST00000636685 LRRN1Q6UXK5 716 aa12.18□□□□□ -0.46
CLN3-249ENST00000636685 ZNF417Q8TAU3 575 aa12.18□□□□□ -0.46
CLN3-249ENST00000636685 ZNF587Q96SQ5 575 aaPredicted RBP12.18□□□□□ -0.46
CLN3-249ENST00000636685 ULBP2Q9BZM5 246 aa12.18□□□□□ -0.46
CLN3-249ENST00000636685 DPY30Q9C005 99 aa12.18□□□□□ -0.46
CLN3-249ENST00000636685 EGLN1Q9GZT9 426 aa12.18□□□□□ -0.46
CLN3-249ENST00000636685 B3GAT2Q9NPZ5 323 aa12.18□□□□□ -0.46
CLN3-249ENST00000636685 NECAP2Q9NVZ3 263 aa12.18□□□□□ -0.46
CLN3-249ENST00000636685 IL20RAQ9UHF4 553 aa12.18□□□□□ -0.46
CLN3-249ENST00000636685 TRIM33Q9UPN9 1127 aa12.18□□□□□ -0.46
CLN3-249ENST00000636685 A0A096LPI6 279 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 HMGN4O00479 90 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 AIM2O14862 343 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 HPRP00739 348 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 PRG2P13727 222 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 PRPS1L1P21108 318 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 RPL15P61313 204 aaKnown RBP12.17□□□□□ -0.46
CLN3-249ENST00000636685 COPZ1P61923 177 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 PMS2P3Q13401 168 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 GNA13Q14344 377 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 ZMYND11Q15326 602 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 TMEM155Q4W5P6 130 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 OXLD1Q5BKU9 147 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 C6orf89Q6UWU4 347 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 BTNL3Q6UXE8 466 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 LRRC28Q86X40 367 aaPredicted RBP12.17□□□□□ -0.46
CLN3-249ENST00000636685 ZNF440Q8IYI8 595 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 MIER2Q8N344 545 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 CPEB3Q8NE35 698 aaKnown RBP12.17□□□□□ -0.46
CLN3-249ENST00000636685 OR6N1Q8NGY5 312 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 PNPT1Q8TCS8 783 aaKnown RBP12.17□□□□□ -0.46
CLN3-249ENST00000636685 TWIST2Q8WVJ9 160 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 DYRK2Q92630 601 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 PPP1R14AQ96A00 147 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 TXNDC15Q96J42 360 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 FAM71F1Q96KD3 344 aaPredicted RBP12.17□□□□□ -0.46
CLN3-249ENST00000636685 LRR1Q96L50 414 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 MECRQ9BV79 373 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 KRTAP17-1Q9BYP8 105 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 BCL2L14Q9BZR8 327 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 ARGLU1Q9NWB6 273 aaPredicted RBP12.17□□□□□ -0.46
CLN3-249ENST00000636685 POMT1Q9Y6A1 747 aa12.17□□□□□ -0.46
CLN3-249ENST00000636685 IGHV2-70DA0A0C4DH43 119 aa12.16□□□□□ -0.46
CLN3-249ENST00000636685 MS4A18H0YCH9 400 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms