RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 UBAP1Q9NZ09 502 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 KLHL14Q9P2G3 628 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 IFT52Q9Y366 437 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 RAP2CQ9Y3L5 183 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 CMYA5Q8N3K9 4069 aa12.5□□□□□ -0.41
PNKP-218ENST00000625299 PRKDCP78527 4128 aaKnown RBP12.49□□□□□ -0.41
PNKP-218ENST00000625299 A0A0G2JPF8 293 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 LOC102725191A0A1B0GVB3 256 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 A0A1B0GWA3 101 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 SLC22A23A1A5C7 686 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 HNRNPCL2B2RXH8 293 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 HNRNPCL3B7ZW38 293 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 HNRNPCL1O60812 293 aaKnown RBP12.49□□□□□ -0.41
PNKP-218ENST00000625299 FZD7O75084 574 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 FSHBP01225 129 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 SERPINE1P05121 402 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 SERPINA5P05154 406 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 HNRNPCL4P0DMR1 293 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 DRD4P21917 467 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 AHCYP23526 432 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 MVDP53602 400 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 IFFO1Q0D2I5 559 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 LRRC74AQ0VAA2 488 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 BAMBIQ13145 260 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 PMS2P3Q13401 168 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 MMEL1Q495T6 779 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 ALG10BQ5I7T1 473 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 C5orf46Q6UWT4 87 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 C6orf89Q6UWU4 347 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 NET1Q7Z628 596 aaPredicted RBP12.49□□□□□ -0.41
PNKP-218ENST00000625299 C10orf53Q8N6V4 93 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 ADPRHL1Q8NDY3 354 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 TAF15Q92804 592 aaKnown RBP eCLIP12.49□□□□□ -0.41
PNKP-218ENST00000625299 DVL3Q92997 716 aaPredicted RBP12.49□□□□□ -0.41
PNKP-218ENST00000625299 C20orf27Q9GZN8 174 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 SLCO1C1Q9NYB5 712 aa12.49□□□□□ -0.41
PNKP-218ENST00000625299 IGLV3-9A0A075B6K5 115 aa12.48□□□□□ -0.41
PNKP-218ENST00000625299 ZNF500O60304 480 aaPredicted RBP12.48□□□□□ -0.41
PNKP-218ENST00000625299 MT-ND5P03915 603 aa12.48□□□□□ -0.41
PNKP-218ENST00000625299 OR8G3PP0DMU2 310 aa12.48□□□□□ -0.41
PNKP-218ENST00000625299 MAKP20794 623 aa12.48□□□□□ -0.41
PNKP-218ENST00000625299 HTR2AP28223 471 aa12.48□□□□□ -0.41
PNKP-218ENST00000625299 ETV4P43268 484 aa12.48□□□□□ -0.41
PNKP-218ENST00000625299 PUDPQ08623 228 aa12.48□□□□□ -0.41
PNKP-218ENST00000625299 GTDC1Q4AE62 458 aa12.48□□□□□ -0.41
PNKP-218ENST00000625299 SLC22A24Q8N4F4 322 aa12.48□□□□□ -0.41
PNKP-218ENST00000625299 ST7LQ8TDW4 575 aa12.48□□□□□ -0.41
PNKP-218ENST00000625299 C11orf40Q8WZ69 217 aa12.48□□□□□ -0.41
PNKP-218ENST00000625299 CCL17Q92583 94 aa12.48□□□□□ -0.41
PNKP-218ENST00000625299 LRRC58Q96CX6 371 aa12.48□□□□□ -0.41
PNKP-218ENST00000625299 SH3GL3Q99963 347 aa12.48□□□□□ -0.41
PNKP-218ENST00000625299 RNF121Q9H920 327 aa12.48□□□□□ -0.41
PNKP-218ENST00000625299 TPT1P8Q9HAU6 139 aa12.48□□□□□ -0.41
PNKP-218ENST00000625299 C12orf10Q9HB07 376 aa12.48□□□□□ -0.41
PNKP-218ENST00000625299 ZNF69Q9UC07 566 aa12.48□□□□□ -0.41
PNKP-218ENST00000625299 LRRN3E7EW58 273 aa12.47□□□□□ -0.41
PNKP-218ENST00000625299 C11orf98E9PRG8 122 aa12.47□□□□□ -0.41
PNKP-218ENST00000625299 NUDT7P0C024 238 aa12.47□□□□□ -0.41
PNKP-218ENST00000625299 ZNF250P15622 560 aa12.47□□□□□ -0.41
PNKP-218ENST00000625299 SLC1A6P48664 564 aa12.47□□□□□ -0.41
PNKP-218ENST00000625299 BIDP55957 195 aa12.47□□□□□ -0.41
PNKP-218ENST00000625299 IL13RA1P78552 427 aa12.47□□□□□ -0.41
PNKP-218ENST00000625299 DOK3Q7L591 496 aa12.47□□□□□ -0.41
PNKP-218ENST00000625299 BCL6BQ8N143 479 aaPredicted RBP12.47□□□□□ -0.41
PNKP-218ENST00000625299 ZNF519Q8TB69 540 aa12.47□□□□□ -0.41
PNKP-218ENST00000625299 DNAJA4Q8WW22 397 aaPredicted RBP12.47□□□□□ -0.41
PNKP-218ENST00000625299 MAL2Q969L2 176 aa12.47□□□□□ -0.41
PNKP-218ENST00000625299 ELMOD3Q96FG2 381 aa12.47□□□□□ -0.41
PNKP-218ENST00000625299 SLC41A3Q96GZ6 507 aa12.47□□□□□ -0.41
PNKP-218ENST00000625299 C1orf147Q96MC9 270 aaPredicted RBP12.47□□□□□ -0.41
PNKP-218ENST00000625299 MOGAT1Q96PD6 335 aa12.47□□□□□ -0.41
PNKP-218ENST00000625299 SORT1Q99523 831 aa12.47□□□□□ -0.41
PNKP-218ENST00000625299 EPYCQ99645 322 aa12.47□□□□□ -0.41
PNKP-218ENST00000625299 ZMAT3Q9HA38 289 aaKnown RBP12.47□□□□□ -0.41
PNKP-218ENST00000625299 MEAF6Q9HAF1 191 aa12.47□□□□□ -0.41
PNKP-218ENST00000625299 PNPOQ9NVS9 261 aa12.47□□□□□ -0.41
PNKP-218ENST00000625299 NKIRAS2Q9NYR9 191 aa12.47□□□□□ -0.41
PNKP-218ENST00000625299 SELENONQ9NZV5 590 aa12.47□□□□□ -0.41
PNKP-218ENST00000625299 LGALS13Q9UHV8 139 aa12.47□□□□□ -0.41
PNKP-218ENST00000625299 NUP50Q9UKX7 468 aa12.47□□□□□ -0.41
PNKP-218ENST00000625299 VWFP04275 2813 aa12.47□□□□□ -0.41
PNKP-218ENST00000625299 C5orf58C9J3I9 102 aa12.46□□□□□ -0.41
PNKP-218ENST00000625299 SPRY3O43610 288 aa12.46□□□□□ -0.41
PNKP-218ENST00000625299 TYROBPO43914 113 aa12.46□□□□□ -0.41
PNKP-218ENST00000625299 BGLAPP02818 100 aa12.46□□□□□ -0.41
PNKP-218ENST00000625299 ATP4BP51164 291 aa12.46□□□□□ -0.41
PNKP-218ENST00000625299 ZNF81P51508 661 aa12.46□□□□□ -0.41
PNKP-218ENST00000625299 NCALDP61601 193 aa12.46□□□□□ -0.41
PNKP-218ENST00000625299 TBC1D28Q2M2D7 210 aa12.46□□□□□ -0.41
PNKP-218ENST00000625299 PDCD4Q53EL6 469 aaKnown RBP12.46□□□□□ -0.41
PNKP-218ENST00000625299 OGFOD2Q6N063 350 aa12.46□□□□□ -0.41
PNKP-218ENST00000625299 TMEM53Q6P2H8 277 aa12.46□□□□□ -0.41
PNKP-218ENST00000625299 PIWIL3Q7Z3Z3 882 aaKnown RBP12.46□□□□□ -0.41
PNKP-218ENST00000625299 EIF1ADQ8N9N8 165 aaKnown RBP12.46□□□□□ -0.41
PNKP-218ENST00000625299 SCAIQ8N9R8 606 aa12.46□□□□□ -0.41
PNKP-218ENST00000625299 SLC35B4Q969S0 331 aa12.46□□□□□ -0.41
PNKP-218ENST00000625299 SLC25A28Q96A46 364 aa12.46□□□□□ -0.41
PNKP-218ENST00000625299 VPS33AQ96AX1 596 aa12.46□□□□□ -0.41
PNKP-218ENST00000625299 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.46□□□□□ -0.41
PNKP-218ENST00000625299 GPR45Q9Y5Y3 372 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms