RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 CTXN1P60606 82 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 FAM98BQ52LJ0 330 aaKnown RBP11.81□□□□□ -0.52
LINC00540-202ENST00000616974 MTX3Q5HYI7 312 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 OR2T5Q6IEZ7 315 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 CCDC121Q6ZUS5 278 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 ANKK1Q8NFD2 765 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 OR2T29Q8NH02 315 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 FAM222BQ8WU58 562 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 LRRC46Q96FV0 321 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 RSRC1Q96IZ7 334 aaKnown RBP11.81□□□□□ -0.52
LINC00540-202ENST00000616974 Q96M85 177 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 MUS81Q96NY9 551 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 MRPL13Q9BYD1 178 aaKnown RBP11.81□□□□□ -0.52
LINC00540-202ENST00000616974 ANKRD19PQ9H560 264 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 NTN4Q9HB63 628 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 ZNF224Q9NZL3 707 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 NDRG3Q9UGV2 375 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 SETD2Q9BYW2 2564 aaPredicted RBP11.8□□□□□ -0.52
LINC00540-202ENST00000616974 CSPG4Q6UVK1 2322 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 DPRXA6NFQ7 191 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 AQP12BA6NM10 295 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 ZNF587BE7ETH6 402 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 SLC43A1O75387 559 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 KRT33AO76009 404 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 IGF2P01344 180 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 ITGA2P17301 1181 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 MPGP29372 298 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 CDAP32320 146 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 IFNA8P32881 189 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 ZNF83P51522 516 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 ETFDHQ16134 617 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 RRM2BQ7LG56 351 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 CDC20BQ86Y33 519 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 AQP12AQ8IXF9 295 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 RNF113BQ8IZP6 322 aaKnown RBP11.8□□□□□ -0.52
LINC00540-202ENST00000616974 OR8D4Q8NGM9 314 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 OR1K1Q8NGR3 316 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 GTPBP3Q969Y2 492 aaKnown RBP11.8□□□□□ -0.52
LINC00540-202ENST00000616974 PLPPR2Q96GM1 343 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 NIPSNAP1Q9BPW8 284 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 MAGIXQ9H6Y5 334 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 SAMHD1Q9Y3Z3 626 aaKnown RBP11.8□□□□□ -0.52
LINC00540-202ENST00000616974 SLC25A15Q9Y619 301 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 FKBP6O75344 327 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 TRMUO75648 421 aaKnown RBP11.8□□□□□ -0.52
LINC00540-202ENST00000616974 SOX14O95416 240 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 BCL10O95999 233 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 CST1P01037 141 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 HMGA2P52926 109 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 DAZAP2Q15038 168 aaPredicted RBP11.8□□□□□ -0.52
LINC00540-202ENST00000616974 TBRG1Q3YBR2 411 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 ZBED5Q49AG3 693 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 MESTQ5EB52 335 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 C1orf146Q5VVC0 180 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 KLHL24Q6TFL4 600 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 FAM122BQ7Z309 247 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 POMGNT2Q8NAT1 580 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 OR6N1Q8NGY5 312 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 OR6X1Q8NH79 312 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 C14orf79Q96F83 325 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 LURAP1Q96LR2 239 aa11.8□□□□□ -0.52
LINC00540-202ENST00000616974 POLDIP3Q9BY77 421 aaKnown RBP11.8□□□□□ -0.52
LINC00540-202ENST00000616974 CHD3Q12873 2000 aaKnown RBP11.79□□□□□ -0.52
LINC00540-202ENST00000616974 CNOT4O95628 575 aaKnown RBP11.79□□□□□ -0.52
LINC00540-202ENST00000616974 GPANK1O95872 356 aa11.79□□□□□ -0.52
LINC00540-202ENST00000616974 TP53P04637 393 aaPredicted RBP11.79□□□□□ -0.52
LINC00540-202ENST00000616974 BSPH1Q075Z2 132 aa11.79□□□□□ -0.52
LINC00540-202ENST00000616974 PPA1Q15181 289 aa11.79□□□□□ -0.52
LINC00540-202ENST00000616974 CLEC12AQ5QGZ9 265 aa11.79□□□□□ -0.52
LINC00540-202ENST00000616974 PTCHD4Q6ZW05 846 aa11.79□□□□□ -0.52
LINC00540-202ENST00000616974 GPR137CQ8N3F9 429 aa11.79□□□□□ -0.52
LINC00540-202ENST00000616974 STEAP2Q8NFT2 490 aa11.79□□□□□ -0.52
LINC00540-202ENST00000616974 LILRB1Q8NHL6 650 aaPredicted RBP11.79□□□□□ -0.52
LINC00540-202ENST00000616974 ZNF519Q8TB69 540 aa11.79□□□□□ -0.52
LINC00540-202ENST00000616974 BCL2L2Q92843 193 aaPredicted RBP11.79□□□□□ -0.52
LINC00540-202ENST00000616974 TMEM54Q969K7 222 aa11.79□□□□□ -0.52
LINC00540-202ENST00000616974 NMD3Q96D46 503 aaKnown RBP11.79□□□□□ -0.52
LINC00540-202ENST00000616974 SLC25A44Q96H78 314 aaPredicted RBP11.79□□□□□ -0.52
LINC00540-202ENST00000616974 PLEKHF2Q9H8W4 249 aa11.79□□□□□ -0.52
LINC00540-202ENST00000616974 GLTPQ9NZD2 209 aa11.79□□□□□ -0.52
LINC00540-202ENST00000616974 NIPBLQ6KC79 2804 aaeCLIP11.79□□□□□ -0.52
LINC00540-202ENST00000616974 UNC119BA6NIH7 251 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 ZNF726A6NNF4 738 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 EBAG9O00559 213 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 ATP5HO75947 161 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 PPP1R3DO95685 299 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 HLA-HP01893 362 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 SCG5P05408 212 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 QDPRP09417 244 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 ACVR1BP36896 505 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 GSSP48637 474 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 CSNK1A1P48729 337 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 KPNB1Q14974 876 aaKnown RBP11.78□□□□□ -0.52
LINC00540-202ENST00000616974 HIST3H3Q16695 136 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 HMBOX1Q6NT76 420 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 ADAM5Q6NVV9 412 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 C1orf94Q6P1W5 598 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 AQP11Q8NBQ7 271 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 PYDC1Q8WXC3 89 aa11.78□□□□□ -0.52
LINC00540-202ENST00000616974 NSMAFQ92636 917 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms