RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ACADSP16219 412 aa14.52□□□□□ -0.08
CCDC28A-202ENST00000611852 RPL4P36578 427 aaKnown RBP14.52□□□□□ -0.08
CCDC28A-202ENST00000611852 RPL27P61353 136 aaKnown RBP14.52□□□□□ -0.08
CCDC28A-202ENST00000611852 TSPAN31Q12999 210 aa14.52□□□□□ -0.08
CCDC28A-202ENST00000611852 TOP3AQ13472 1001 aaPredicted RBP14.52□□□□□ -0.08
CCDC28A-202ENST00000611852 CEACAM16Q2WEN9 425 aa14.52□□□□□ -0.08
CCDC28A-202ENST00000611852 THSD4Q6ZMP0 1018 aa14.52□□□□□ -0.08
CCDC28A-202ENST00000611852 C10orf67Q8IYJ2 551 aa14.52□□□□□ -0.08
CCDC28A-202ENST00000611852 C17orf78Q8N4C9 275 aa14.52□□□□□ -0.08
CCDC28A-202ENST00000611852 TSPAN32Q96QS1 320 aa14.52□□□□□ -0.08
CCDC28A-202ENST00000611852 KATNB1Q9BVA0 655 aa14.52□□□□□ -0.08
CCDC28A-202ENST00000611852 ULBP2Q9BZM5 246 aa14.52□□□□□ -0.08
CCDC28A-202ENST00000611852 B3GAT2Q9NPZ5 323 aa14.52□□□□□ -0.08
CCDC28A-202ENST00000611852 ARMC1Q9NVT9 282 aa14.52□□□□□ -0.08
CCDC28A-202ENST00000611852 GLTPQ9NZD2 209 aa14.52□□□□□ -0.08
CCDC28A-202ENST00000611852 DNAJB9Q9UBS3 223 aa14.52□□□□□ -0.08
CCDC28A-202ENST00000611852 IL20RAQ9UHF4 553 aa14.52□□□□□ -0.08
CCDC28A-202ENST00000611852 ADAM18Q9Y3Q7 739 aa14.52□□□□□ -0.08
CCDC28A-202ENST00000611852 ABCA12Q86UK0 2595 aa14.52□□□□□ -0.09
CCDC28A-202ENST00000611852 FBN2P35556 2912 aa14.52□□□□□ -0.09
CCDC28A-202ENST00000611852 DEFB108AA8MXU0 73 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 CENPBD1B2RD01 187 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 SIAH2O43255 324 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 TRMUO75648 421 aaKnown RBP14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 TIPRLO75663 272 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 SH3BGRP55822 239 aaPredicted RBP14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 ACTR3P61158 418 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 ERVK-25P63136 954 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 HIST3H3Q16695 136 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 LRFN4Q6PJG9 635 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 SMARCD3Q6STE5 483 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 SEZ6L2Q6UXD5 910 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 TMEM179BQ7Z7N9 219 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 WFDC8Q8IUA0 241 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 AQP11Q8NBQ7 271 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 NOXO1Q8NFA2 376 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 OR1K1Q8NGR3 316 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 HDAC2Q92769 488 aaKnown RBP14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 GPX7Q96SL4 187 aaPredicted RBP14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 POLDIP3Q9BY77 421 aaKnown RBP14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 NDEL1Q9GZM8 345 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 NRIP3Q9NQ35 241 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 STX18Q9P2W9 335 aaKnown RBP14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 ZNF99A8MXY4 864 aaPredicted RBP14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 GOSR1O95249 250 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 ACVR1BP36896 505 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 CLRN1P58418 232 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 ARF1P84077 181 aaKnown RBP14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 PPA1Q15181 289 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 HIKESHIQ53FT3 197 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 FAM205BPQ63HN1 556 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 ALKBH2Q6NS38 261 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 SSX8Q7RTT4 187 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 FAM122BQ7Z309 247 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 ARIH2OSQ8N7S6 290 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 WDR31Q8NA23 367 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 SYT14Q8NB59 555 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 OR10G2Q8NGC3 310 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 OR52N5Q8NH56 324 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 ZNF519Q8TB69 540 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 FANK1Q8TC84 345 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 GIPC3Q8TF64 312 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 BCL2L2Q92843 193 aaPredicted RBP14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 MUCL1Q96DR8 90 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 KCNK17Q96T54 332 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 DGCR6LQ9BY27 220 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 OR52D1Q9H346 318 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 NELFAQ9H3P2 528 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 SLC17A5Q9NRA2 495 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 RASSF1Q9NS23 344 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 AP4S1Q9Y587 144 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 SLC25A15Q9Y619 301 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 ITPR2Q14571 2701 aa14.51□□□□□ -0.09
CCDC28A-202ENST00000611852 A0A1W2PR80 420 aa14.5□□□□□ -0.09
CCDC28A-202ENST00000611852 DEAF1O75398 565 aaPredicted RBP14.5□□□□□ -0.09
CCDC28A-202ENST00000611852 E2F6O75461 281 aa14.5□□□□□ -0.09
CCDC28A-202ENST00000611852 HRGP04196 525 aa14.5□□□□□ -0.09
CCDC28A-202ENST00000611852 QDPRP09417 244 aa14.5□□□□□ -0.09
CCDC28A-202ENST00000611852 KPNB1Q14974 876 aaKnown RBP14.5□□□□□ -0.09
CCDC28A-202ENST00000611852 RFX4Q33E94 735 aa14.5□□□□□ -0.09
CCDC28A-202ENST00000611852 TBRG1Q3YBR2 411 aa14.5□□□□□ -0.09
CCDC28A-202ENST00000611852 ANKRD16Q6P6B7 361 aa14.5□□□□□ -0.09
CCDC28A-202ENST00000611852 DPY19L2P2Q6ZN68 376 aa14.5□□□□□ -0.09
CCDC28A-202ENST00000611852 ZNF620Q6ZNG0 422 aa14.5□□□□□ -0.09
CCDC28A-202ENST00000611852 GTPBP3Q969Y2 492 aaKnown RBP14.5□□□□□ -0.09
CCDC28A-202ENST00000611852 Q96M85 177 aa14.5□□□□□ -0.09
CCDC28A-202ENST00000611852 NTN4Q9HB63 628 aa14.5□□□□□ -0.09
CCDC28A-202ENST00000611852 GRHPRQ9UBQ7 328 aa14.5□□□□□ -0.09
CCDC28A-202ENST00000611852 MGAT4BQ9UQ53 548 aa14.5□□□□□ -0.09
CCDC28A-202ENST00000611852 A0A096LPE4 126 aa14.49□□□□□ -0.09
CCDC28A-202ENST00000611852 A0A1W2PPZ6 126 aa14.49□□□□□ -0.09
CCDC28A-202ENST00000611852 ARRDC5A6NEK1 342 aa14.49□□□□□ -0.09
CCDC28A-202ENST00000611852 A6NIZ1 184 aa14.49□□□□□ -0.09
CCDC28A-202ENST00000611852 RAP1BP61224 184 aa14.49□□□□□ -0.09
CCDC28A-202ENST00000611852 RAP1AP62834 184 aa14.49□□□□□ -0.09
CCDC28A-202ENST00000611852 MYBPC1Q00872 1141 aa14.49□□□□□ -0.09
CCDC28A-202ENST00000611852 ZNF627Q7L945 461 aa14.49□□□□□ -0.09
CCDC28A-202ENST00000611852 TMEM200AQ86VY9 491 aa14.49□□□□□ -0.09
CCDC28A-202ENST00000611852 CLDN22Q8N7P3 220 aa14.49□□□□□ -0.09
CCDC28A-202ENST00000611852 MAGEE2Q8TD90 523 aaPredicted RBP14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms