RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 CLDN22Q8N7P3 220 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 ARIH2OSQ8N7S6 290 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 LINC01560Q8TB33 94 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 ZNF519Q8TB69 540 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 CENPNQ96H22 339 aaPredicted RBP17.02■□□□□ 0.32
UPF1-209ENST00000600310 DACH2Q96NX9 599 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 MUS81Q96NY9 551 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 WFIKKN1Q96NZ8 548 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 TSPAN32Q96QS1 320 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 NIPSNAP1Q9BPW8 284 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 B3GAT2Q9NPZ5 323 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 GLTPQ9NZD2 209 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 CDH10Q9Y6N8 788 aa17.02■□□□□ 0.32
UPF1-209ENST00000600310 ALPK2Q86TB3 2170 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 CIB4A0PJX0 185 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 A6NIZ1 184 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 ANKRD65E5RJM6 399 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 APEHP13798 732 aaKnown RBP17.01■□□□□ 0.31
UPF1-209ENST00000600310 ANXA8P13928 327 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 PRKACGP22612 351 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 RAP1BP61224 184 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 RAP1AP62834 184 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 TGFBR3Q03167 851 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 HIST3H3Q16695 136 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 GPR139Q6DWJ6 353 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 C1orf162Q8NEQ5 155 aaPredicted RBP17.01■□□□□ 0.31
UPF1-209ENST00000600310 FAM222BQ8WU58 562 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 HDAC2Q92769 488 aaKnown RBP17.01■□□□□ 0.31
UPF1-209ENST00000600310 S100PBPQ96BU1 408 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 BOD1Q96IK1 185 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 SAMD8Q96LT4 415 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 Q96M85 177 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 ULBP2Q9BZM5 246 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 CRLF2Q9HC73 371 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 GPR35Q9HC97 309 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 S100A14Q9HCY8 104 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 IL20Q9NYY1 176 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 CRIM1Q9NZV1 1036 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 GRHPRQ9UBQ7 328 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 IL20RAQ9UHF4 553 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 ADAM18Q9Y3Q7 739 aa17.01■□□□□ 0.31
UPF1-209ENST00000600310 MAGED1Q9Y5V3 778 aaPredicted RBP17.01■□□□□ 0.31
UPF1-209ENST00000600310 SPTAN1Q13813 2472 aaKnown RBP17.01■□□□□ 0.31
UPF1-209ENST00000600310 UTP20O75691 2785 aaKnown RBP17■□□□□ 0.31
UPF1-209ENST00000600310 SH3D21A4FU49 640 aa17■□□□□ 0.31
UPF1-209ENST00000600310 RAD51DO75771 328 aa17■□□□□ 0.31
UPF1-209ENST00000600310 ACVR1BP36896 505 aa17■□□□□ 0.31
UPF1-209ENST00000600310 RPS6KA3P51812 740 aa17■□□□□ 0.31
UPF1-209ENST00000600310 SH3BGRP55822 239 aaPredicted RBP17■□□□□ 0.31
UPF1-209ENST00000600310 CLRN1P58418 232 aa17■□□□□ 0.31
UPF1-209ENST00000600310 STK11Q15831 433 aa17■□□□□ 0.31
UPF1-209ENST00000600310 GABRA6Q16445 453 aa17■□□□□ 0.31
UPF1-209ENST00000600310 C9orf135Q5VTT2 229 aa17■□□□□ 0.31
UPF1-209ENST00000600310 HIST2H2BCQ6DN03 193 aa17■□□□□ 0.31
UPF1-209ENST00000600310 OR7E24Q6IFN5 339 aa17■□□□□ 0.31
UPF1-209ENST00000600310 LRFN4Q6PJG9 635 aa17■□□□□ 0.31
UPF1-209ENST00000600310 C22orf34Q6ZV56 151 aa17■□□□□ 0.31
UPF1-209ENST00000600310 HIPK1Q86Z02 1210 aa17■□□□□ 0.31
UPF1-209ENST00000600310 NOXO1Q8NFA2 376 aa17■□□□□ 0.31
UPF1-209ENST00000600310 KCNK17Q96T54 332 aa17■□□□□ 0.31
UPF1-209ENST00000600310 PKP2Q99959 881 aa17■□□□□ 0.31
UPF1-209ENST00000600310 ALG12Q9BV10 488 aa17■□□□□ 0.31
UPF1-209ENST00000600310 EGLN3Q9H6Z9 239 aa17■□□□□ 0.31
UPF1-209ENST00000600310 KCNN3Q9UGI6 736 aa17■□□□□ 0.31
UPF1-209ENST00000600310 IER3IP1Q9Y5U9 82 aa17■□□□□ 0.31
UPF1-209ENST00000600310 NBPF19A0A087WUL8 3843 aa16.99■□□□□ 0.31
UPF1-209ENST00000600310 G3V2T6 193 aa16.99■□□□□ 0.31
UPF1-209ENST00000600310 IMPA2O14732 288 aa16.99■□□□□ 0.31
UPF1-209ENST00000600310 ARPC3O15145 178 aa16.99■□□□□ 0.31
UPF1-209ENST00000600310 PPP1R3DO95685 299 aa16.99■□□□□ 0.31
UPF1-209ENST00000600310 TXNDC12O95881 172 aa16.99■□□□□ 0.31
UPF1-209ENST00000600310 TP53P04637 393 aaPredicted RBP16.99■□□□□ 0.31
UPF1-209ENST00000600310 EPXP11678 715 aa16.99■□□□□ 0.31
UPF1-209ENST00000600310 SDHAP31040 664 aa16.99■□□□□ 0.31
UPF1-209ENST00000600310 CEACAM16Q2WEN9 425 aa16.99■□□□□ 0.31
UPF1-209ENST00000600310 TIMM23BQ5SRD1 257 aa16.99■□□□□ 0.31
UPF1-209ENST00000600310 KLHL17Q6TDP4 642 aa16.99■□□□□ 0.31
UPF1-209ENST00000600310 P2RY8Q86VZ1 359 aa16.99■□□□□ 0.31
UPF1-209ENST00000600310 ZDHHC13Q8IUH4 622 aa16.99■□□□□ 0.31
UPF1-209ENST00000600310 SVOPLQ8N434 492 aa16.99■□□□□ 0.31
UPF1-209ENST00000600310 C17orf78Q8N4C9 275 aa16.99■□□□□ 0.31
UPF1-209ENST00000600310 ATG16L2Q8NAA4 619 aa16.99■□□□□ 0.31
UPF1-209ENST00000600310 SYT14Q8NB59 555 aa16.99■□□□□ 0.31
UPF1-209ENST00000600310 NMD3Q96D46 503 aaKnown RBP16.99■□□□□ 0.31
UPF1-209ENST00000600310 ZNF837Q96EG3 531 aaPredicted RBP16.99■□□□□ 0.31
UPF1-209ENST00000600310 ZNF570Q96NI8 536 aa16.99■□□□□ 0.31
UPF1-209ENST00000600310 MED18Q9BUE0 208 aa16.99■□□□□ 0.31
UPF1-209ENST00000600310 ZNF556Q9HAH1 456 aa16.99■□□□□ 0.31
UPF1-209ENST00000600310 TEX13CA0A0J9YWL9 993 aa16.98■□□□□ 0.31
UPF1-209ENST00000600310 OR5H1A6NKK0 313 aa16.98■□□□□ 0.31
UPF1-209ENST00000600310 QDPRP09417 244 aa16.98■□□□□ 0.31
UPF1-209ENST00000600310 NR2C1P13056 603 aa16.98■□□□□ 0.31
UPF1-209ENST00000600310 ZNF23P17027 643 aa16.98■□□□□ 0.31
UPF1-209ENST00000600310 CDH2P19022 906 aaPredicted RBP16.98■□□□□ 0.31
UPF1-209ENST00000600310 ZNF133P52736 654 aaPredicted RBP16.98■□□□□ 0.31
UPF1-209ENST00000600310 ARF1P84077 181 aaKnown RBP16.98■□□□□ 0.31
UPF1-209ENST00000600310 FAHD1Q6P587 224 aa16.98■□□□□ 0.31
UPF1-209ENST00000600310 OR52L1Q8NGH7 329 aa16.98■□□□□ 0.31
UPF1-209ENST00000600310 OR1K1Q8NGR3 316 aa16.98■□□□□ 0.31
UPF1-209ENST00000600310 FNDC8Q8TC99 324 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms