RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 B3GAT2Q9NPZ5 323 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 INIPQ9NRY2 104 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 GLTPQ9NZD2 209 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 ZNF224Q9NZL3 707 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 ACTR3BQ9P1U1 418 aa14.07□□□□□ -0.16
TRIM28-213ENST00000598355 MTORP42345 2549 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 A0A096LPE4 126 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 IGHV1-18A0A0C4DH31 117 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 A0A1W2PPZ6 126 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 CDC42EP2O14613 210 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 BCL10O95999 233 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 F13BP05160 661 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 H1F0P07305 194 aaKnown RBP14.06□□□□□ -0.16
TRIM28-213ENST00000598355 SOD3P08294 240 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 ATP6V1B2P21281 511 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 MSX2P35548 267 aaPredicted RBP14.06□□□□□ -0.16
TRIM28-213ENST00000598355 DAP3P51398 398 aaKnown RBP14.06□□□□□ -0.16
TRIM28-213ENST00000598355 UBE2NP61088 152 aaKnown RBP14.06□□□□□ -0.16
TRIM28-213ENST00000598355 ADAM8P78325 824 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 MXRA7P84157 204 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 RUNX1T1Q06455 604 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 HDDC2Q7Z4H3 204 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 TGIF2LYQ8IUE0 185 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 OR6N1Q8NGY5 312 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 BCAS4Q8TDM0 211 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 ZNF566Q969W8 418 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 ZNF75AQ96N20 296 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 SLC38A2Q96QD8 506 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 FOXB1Q99853 325 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 KATNB1Q9BVA0 655 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 TXNIPQ9H3M7 391 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 MUC13Q9H3R2 512 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 B3GNT2Q9NY97 397 aa14.06□□□□□ -0.16
TRIM28-213ENST00000598355 PRPF19Q9UMS4 504 aaKnown RBP14.06□□□□□ -0.16
TRIM28-213ENST00000598355 CHD3Q12873 2000 aaKnown RBP14.05□□□□□ -0.16
TRIM28-213ENST00000598355 RTTNQ86VV8 2226 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 A0A1W2PRG6 482 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 TCRBV5S2A0A599 114 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 E7EQL1 145 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 hCG_2039718K7EN88 272 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 SMPD2O60906 423 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 SEC14L2O76054 403 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 IGHG1P01857 330 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 CBR1P16152 277 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 MAGEA2P43356 314 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 TAF11Q15544 211 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 ALG10Q5BKT4 473 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 MTX3Q5HYI7 312 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 SHEQ5VZ18 495 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 C11orf71Q6IPW1 123 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 LCN8Q6JVE9 175 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 LRFN4Q6PJG9 635 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 TBPL2Q6SJ96 375 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 PRSS57Q6UWY2 283 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 ZNF730Q6ZMV8 503 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 RINLQ6ZS11 566 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 TRPM8Q7Z2W7 1104 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 MYPOPQ86VE0 399 aaPredicted RBP14.05□□□□□ -0.16
TRIM28-213ENST00000598355 PIAS4Q8N2W9 510 aaPredicted RBP14.05□□□□□ -0.16
TRIM28-213ENST00000598355 SMAP2Q8WU79 429 aaPredicted RBP14.05□□□□□ -0.16
TRIM28-213ENST00000598355 TMEM171Q8WVE6 324 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 TRAF4Q9BUZ4 470 aaPredicted RBP14.05□□□□□ -0.16
TRIM28-213ENST00000598355 TMUB1Q9BVT8 246 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 C1QTNF6Q9BXI9 259 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 IL1RAPQ9NPH3 570 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 DLL4Q9NR61 685 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 TAS2R1Q9NYW7 299 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 CISD1Q9NZ45 108 aaKnown RBP14.05□□□□□ -0.16
TRIM28-213ENST00000598355 STX18Q9P2W9 335 aaKnown RBP14.05□□□□□ -0.16
TRIM28-213ENST00000598355 TMEM5Q9Y2B1 443 aa14.05□□□□□ -0.16
TRIM28-213ENST00000598355 TRBV4-1A0A0J9YWV2 114 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 TRMUO75648 421 aaKnown RBP14.04□□□□□ -0.16
TRIM28-213ENST00000598355 DIRAS1O95057 198 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 CD8AP01732 235 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 CECR9P0C854 216 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 SAGP10523 405 aaPredicted RBP14.04□□□□□ -0.16
TRIM28-213ENST00000598355 ZNF26P17031 533 aaPredicted RBP14.04□□□□□ -0.16
TRIM28-213ENST00000598355 ITGA2P17301 1181 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 OMPP47874 163 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 PTH2RP49190 550 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 TUBA1BP68363 451 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 TUBA4AP68366 448 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 LAPTM4AQ15012 233 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 SEC23BQ15437 767 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 NRN1LQ496H8 165 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 C10orf128Q5T292 105 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 PODNL1Q6PEZ8 512 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 SLC22A25Q6T423 547 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 TUBA1AQ71U36 451 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 PIWIL3Q7Z3Z3 882 aaKnown RBP14.04□□□□□ -0.16
TRIM28-213ENST00000598355 OR13C2Q8NGS9 318 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 ZNF519Q8TB69 540 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 KCNK17Q96T54 332 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 DHRS9Q9BPW9 319 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 CXorf56Q9H5V9 222 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 SEC61A2Q9H9S3 476 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 SMURF2Q9HAU4 748 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 NOX3Q9HBY0 568 aa14.04□□□□□ -0.16
TRIM28-213ENST00000598355 FAM32AQ9Y421 112 aaKnown RBP14.04□□□□□ -0.16
TRIM28-213ENST00000598355 V9GYQ6 96 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms