RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 TTC9Q92623 222 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 RSC1A1Q92681 617 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.92□□□□□ -0.18
UPF1-204ENST00000596842 NTMQ9P121 344 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 ENTPD2Q9Y5L3 495 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 F8W036 122 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 APEHP13798 732 aaKnown RBP13.92□□□□□ -0.18
UPF1-204ENST00000596842 KIR2DS3Q14952 304 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 SCGB2B2Q4G0G5 96 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 FAM69AQ5T7M9 428 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 PWWP2BQ6NUJ5 590 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 LRFN4Q6PJG9 635 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 CA13Q8N1Q1 262 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 POMGNT2Q8NAT1 580 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 OR51S1Q8NGJ8 323 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 DUSP19Q8WTR2 217 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 RGP1Q92546 391 aaPredicted RBP13.92□□□□□ -0.18
UPF1-204ENST00000596842 SYT4Q9H2B2 425 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 WDR76Q9H967 626 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 PILRAQ9UKJ1 303 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 LINC00587B1AMM8 73 aa13.91□□□□□ -0.18
UPF1-204ENST00000596842 RRASP10301 218 aa13.91□□□□□ -0.18
UPF1-204ENST00000596842 SORDQ00796 357 aa13.91□□□□□ -0.18
UPF1-204ENST00000596842 FHL5Q5TD97 284 aa13.91□□□□□ -0.18
UPF1-204ENST00000596842 HACD4Q5VWC8 232 aa13.91□□□□□ -0.18
UPF1-204ENST00000596842 CBLN3Q6UW01 205 aa13.91□□□□□ -0.18
UPF1-204ENST00000596842 PLPP7Q8NBV4 271 aa13.91□□□□□ -0.18
UPF1-204ENST00000596842 MRPL48Q96GC5 212 aaKnown RBP13.91□□□□□ -0.18
UPF1-204ENST00000596842 FOXJ3Q9UPW0 622 aa13.91□□□□□ -0.18
UPF1-204ENST00000596842 B4DGG1 531 aa13.91□□□□□ -0.18
UPF1-204ENST00000596842 CYR61O00622 381 aa13.91□□□□□ -0.18
UPF1-204ENST00000596842 GAAP10253 952 aa13.91□□□□□ -0.18
UPF1-204ENST00000596842 COL9A1P20849 921 aa13.91□□□□□ -0.18
UPF1-204ENST00000596842 EFNB2P52799 333 aa13.91□□□□□ -0.18
UPF1-204ENST00000596842 CLINT1Q14677 625 aa13.91□□□□□ -0.18
UPF1-204ENST00000596842 ITPRIPL2Q3MIP1 535 aa13.91□□□□□ -0.18
UPF1-204ENST00000596842 ALG10Q5BKT4 473 aa13.91□□□□□ -0.18
UPF1-204ENST00000596842 OR14A16Q8NHC5 309 aa13.91□□□□□ -0.18
UPF1-204ENST00000596842 GRHPRQ9UBQ7 328 aa13.91□□□□□ -0.18
UPF1-204ENST00000596842 ST6GAL1P15907 406 aa13.91□□□□□ -0.18
UPF1-204ENST00000596842 CD53P19397 219 aa13.91□□□□□ -0.18
UPF1-204ENST00000596842 FAM74A1Q5RGS3 127 aa13.91□□□□□ -0.18
UPF1-204ENST00000596842 ATOH1Q92858 354 aaPredicted RBP13.91□□□□□ -0.18
UPF1-204ENST00000596842 HGDQ93099 445 aa13.91□□□□□ -0.18
UPF1-204ENST00000596842 RP2O75695 350 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 FABP1P07148 127 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 DPP4P27487 766 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 ZNF550Q7Z398 422 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 HAVCR2Q8TDQ0 301 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 CPNE2Q96FN4 548 aaPredicted RBP13.9□□□□□ -0.18
UPF1-204ENST00000596842 DGAT2Q96PD7 388 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 STACQ99469 402 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 NRSN2Q9GZP1 204 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 ATG5Q9H1Y0 275 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 PNO1Q9NRX1 252 aaKnown RBP13.9□□□□□ -0.18
UPF1-204ENST00000596842 ACOT7O00154 380 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 GALR3O60755 368 aaPredicted RBP13.9□□□□□ -0.18
UPF1-204ENST00000596842 ADRA2CP18825 462 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 GPR143P51810 404 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 BIKQ13323 160 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 GLDNQ6ZMI3 551 aaPredicted RBP13.9□□□□□ -0.18
UPF1-204ENST00000596842 SYS1Q8N2H4 156 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 OR4C16Q8NGL9 310 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 OR10Z1Q8NGY1 313 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 ANKRD9Q96BM1 317 aaPredicted RBP13.9□□□□□ -0.18
UPF1-204ENST00000596842 S100PBPQ96BU1 408 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 MMABQ96EY8 250 aaPredicted RBP13.9□□□□□ -0.18
UPF1-204ENST00000596842 MYADMQ96S97 322 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 CHST6Q9GZX3 395 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 ANKRD10Q9NXR5 420 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 FBXL3Q9UKT7 428 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 TRANK1O15050 2925 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 A0A1B0GW55 424 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 hCG_1807616A0A1W2PRN6 198 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 M0QYG6 137 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 OR6A2O95222 327 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 DUX4L2P0CJ85 424 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 DUX4L3P0CJ86 424 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 DUX4L4P0CJ87 422 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 DUX4L5P0CJ88 424 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 DUX4L6P0CJ89 424 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 DUX4L7P0CJ90 424 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 MFSD13AQ14CX5 517 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 LIN54Q6MZP7 749 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 SLC35F3Q8IY50 421 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 NT5CQ8TCD5 201 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 MNTQ99583 582 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 WDR77Q9BQA1 342 aaPredicted RBP13.9□□□□□ -0.18
UPF1-204ENST00000596842 OR8D2Q9GZM6 311 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 SYNDIG1Q9H7V2 258 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 FRRS1LQ9P0K9 344 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 MBD2Q9UBB5 411 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 DUX4Q9UBX2 424 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 KLF15Q9UIH9 416 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 ASXL3Q9C0F0 2248 aa13.9□□□□□ -0.18
UPF1-204ENST00000596842 C2orf74A8MZ97 194 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 G3V3Q6 166 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 CTNSO60931 367 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 TACSTD2P09758 323 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 RPS4Y1P22090 263 aaKnown RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms