RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 MAGEA13PA6NCF6 341 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 GYPBP06028 91 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 DBTP11182 482 aaKnown RBP13.03□□□□□ -0.32
VRK3-212ENST00000596814 SPI1P17947 270 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 SLC2A5P22732 501 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 HTR1FP30939 366 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 CLRN1P58418 232 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 GABARAPL2P60520 117 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 RPS7P62081 194 aaKnown RBP13.03□□□□□ -0.32
VRK3-212ENST00000596814 LGALS3BPQ08380 585 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 CAMK2DQ13557 499 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 APOFQ13790 326 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 ST3GAL2Q16842 350 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 PCSK4Q6UW60 755 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 MEPCEQ7L2J0 689 aaKnown RBP13.03□□□□□ -0.32
VRK3-212ENST00000596814 P4HA3Q7Z4N8 544 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 ADGRE4PQ86SQ3 457 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 MCEMP1Q8IX19 187 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 ZIC4Q8N9L1 334 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 SYT14Q8NB59 555 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 ZNF540Q8NDQ6 660 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 TRIB1Q96RU8 372 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 RHNO1Q9BSD3 238 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 ALG12Q9BV10 488 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 ING1Q9UK53 422 aaPredicted RBP13.03□□□□□ -0.32
VRK3-212ENST00000596814 RCE1Q9Y256 329 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 USP24Q9UPU5 2620 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 CCDC182A6NF36 153 aa13.02□□□□□ -0.32
VRK3-212ENST00000596814 SLC22A31A6NKX4 558 aa13.02□□□□□ -0.32
VRK3-212ENST00000596814 AHRRA9YTQ3 701 aa13.02□□□□□ -0.32
VRK3-212ENST00000596814 GPR171O14626 319 aa13.02□□□□□ -0.32
VRK3-212ENST00000596814 AHCYL1O43865 530 aa13.02□□□□□ -0.32
VRK3-212ENST00000596814 TGM6O95932 706 aa13.02□□□□□ -0.32
VRK3-212ENST00000596814 TPOP07202 933 aa13.02□□□□□ -0.32
VRK3-212ENST00000596814 PGA4P0DJD7 388 aa13.02□□□□□ -0.32
VRK3-212ENST00000596814 PGA3P0DJD8 388 aa13.02□□□□□ -0.32
VRK3-212ENST00000596814 EEF1B2P24534 225 aaKnown RBP13.02□□□□□ -0.32
VRK3-212ENST00000596814 DBPQ10586 325 aaPredicted RBP13.02□□□□□ -0.32
VRK3-212ENST00000596814 ACSF3Q4G176 576 aaPredicted RBP13.02□□□□□ -0.32
VRK3-212ENST00000596814 CARD17Q5XLA6 110 aa13.02□□□□□ -0.32
VRK3-212ENST00000596814 GTF2IRD2BQ6EKJ0 949 aa13.02□□□□□ -0.32
VRK3-212ENST00000596814 AHSA2Q719I0 299 aa13.02□□□□□ -0.32
VRK3-212ENST00000596814 GTF2IRD2Q86UP8 949 aa13.02□□□□□ -0.32
VRK3-212ENST00000596814 OR2T4Q8NH00 348 aa13.02□□□□□ -0.32
VRK3-212ENST00000596814 ASB6Q9NWX5 421 aa13.02□□□□□ -0.32
VRK3-212ENST00000596814 PSORS1C1Q9UIG5 152 aa13.02□□□□□ -0.32
VRK3-212ENST00000596814 ATRXP46100 2492 aa13.02□□□□□ -0.33
VRK3-212ENST00000596814 EFCAB10A6NFE3 127 aa13.02□□□□□ -0.33
VRK3-212ENST00000596814 TTLL8A6PVC2 850 aa13.02□□□□□ -0.33
VRK3-212ENST00000596814 CENPBD1B2RD01 187 aa13.02□□□□□ -0.33
VRK3-212ENST00000596814 PTGES3LE9PB15 166 aa13.02□□□□□ -0.33
VRK3-212ENST00000596814 ABOP16442 354 aa13.02□□□□□ -0.33
VRK3-212ENST00000596814 MTNR1AP48039 350 aa13.02□□□□□ -0.33
VRK3-212ENST00000596814 SLC35A2P78381 396 aa13.02□□□□□ -0.33
VRK3-212ENST00000596814 TMED1Q13445 227 aa13.02□□□□□ -0.33
VRK3-212ENST00000596814 SF3B4Q15427 424 aaKnown RBP eCLIP13.02□□□□□ -0.33
VRK3-212ENST00000596814 SLC35D3Q5M8T2 416 aa13.02□□□□□ -0.33
VRK3-212ENST00000596814 LCN1P1Q5VSP4 162 aa13.02□□□□□ -0.33
VRK3-212ENST00000596814 ZNF585AQ6P3V2 769 aa13.02□□□□□ -0.33
VRK3-212ENST00000596814 GFRALQ6UXV0 394 aa13.02□□□□□ -0.33
VRK3-212ENST00000596814 CD163Q86VB7 1156 aa13.02□□□□□ -0.33
VRK3-212ENST00000596814 PROKR2Q8NFJ6 384 aa13.02□□□□□ -0.33
VRK3-212ENST00000596814 IPCEF1Q8WWN9 437 aaPredicted RBP13.02□□□□□ -0.33
VRK3-212ENST00000596814 KISS1RQ969F8 398 aaPredicted RBP13.02□□□□□ -0.33
VRK3-212ENST00000596814 TMEM45BQ96B21 275 aa13.02□□□□□ -0.33
VRK3-212ENST00000596814 ZNF775Q96BV0 537 aaPredicted RBP13.02□□□□□ -0.33
VRK3-212ENST00000596814 RNFT2Q96EX2 444 aa13.02□□□□□ -0.33
VRK3-212ENST00000596814 WBP1Q96G27 269 aa13.02□□□□□ -0.33
VRK3-212ENST00000596814 TSSK2Q96PF2 358 aa13.02□□□□□ -0.33
VRK3-212ENST00000596814 OR2M2Q96R28 347 aa13.02□□□□□ -0.33
VRK3-212ENST00000596814 MRPL13Q9BYD1 178 aaKnown RBP13.02□□□□□ -0.33
VRK3-212ENST00000596814 RNF122Q9H9V4 155 aa13.02□□□□□ -0.33
VRK3-212ENST00000596814 BCO1Q9HAY6 547 aa13.02□□□□□ -0.33
VRK3-212ENST00000596814 PAK1IP1Q9NWT1 392 aaPredicted RBP13.02□□□□□ -0.33
VRK3-212ENST00000596814 CNOT2Q9NZN8 540 aaKnown RBP13.02□□□□□ -0.33
VRK3-212ENST00000596814 WARS2Q9UGM6 360 aaKnown RBP13.02□□□□□ -0.33
VRK3-212ENST00000596814 FKBP7Q9Y680 259 aa13.02□□□□□ -0.33
VRK3-212ENST00000596814 TRIM64A6NGJ6 449 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 FIGNL2A6NMB9 653 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 EIF4E1BA6NMX2 242 aaKnown RBP13.01□□□□□ -0.33
VRK3-212ENST00000596814 ZNF724A8MTY0 619 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 WDR1O75083 606 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 ZNF432O94892 652 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 PIPP12273 146 aaPredicted RBP13.01□□□□□ -0.33
VRK3-212ENST00000596814 NR2C1P13056 603 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 GABRA1P14867 456 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 CRABP1P29762 137 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 PYCR1P32322 319 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 SLC15A1P46059 708 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 CSNK1A1P48729 337 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 SELENOPP49908 381 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 FMODQ06828 376 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 DNM1P34Q6PK57 102 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 AAED1Q7RTV5 226 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 TMEM123Q8N131 208 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 OR6V1Q8N148 313 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 OR51L1Q8NGJ5 315 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 OR6K6Q8NGW6 343 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 FAM57AQ8TBR7 257 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 FNDC8Q8TC99 324 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms