RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 RPS4XP62701 263 aaKnown RBP15.12■□□□□ 0.01
SHKBP1-212ENST00000596163 PHYHD1Q5SRE7 291 aa15.12■□□□□ 0.01
SHKBP1-212ENST00000596163 FAM205BPQ63HN1 556 aa15.12■□□□□ 0.01
SHKBP1-212ENST00000596163 LURAP1LQ8IV03 231 aa15.12■□□□□ 0.01
SHKBP1-212ENST00000596163 LINC00471Q8N535 108 aa15.12■□□□□ 0.01
SHKBP1-212ENST00000596163 ZNF611Q8N823 705 aa15.12■□□□□ 0.01
SHKBP1-212ENST00000596163 FAM169BQ8N8A8 192 aa15.12■□□□□ 0.01
SHKBP1-212ENST00000596163 FNDC8Q8TC99 324 aa15.12■□□□□ 0.01
SHKBP1-212ENST00000596163 ASB10Q8WXI3 467 aa15.12■□□□□ 0.01
SHKBP1-212ENST00000596163 AKAP1Q92667 903 aaKnown RBP eCLIP15.12■□□□□ 0.01
SHKBP1-212ENST00000596163 CCDC124Q96CT7 223 aaKnown RBP15.12■□□□□ 0.01
SHKBP1-212ENST00000596163 SLC7A6OSQ96CW6 309 aaPredicted RBP15.12■□□□□ 0.01
SHKBP1-212ENST00000596163 CLPTM1LQ96KA5 538 aa15.12■□□□□ 0.01
SHKBP1-212ENST00000596163 ALPK1Q96QP1 1244 aa15.12■□□□□ 0.01
SHKBP1-212ENST00000596163 C1QTNF6Q9BXI9 259 aa15.12■□□□□ 0.01
SHKBP1-212ENST00000596163 CCM2LQ9NUG4 571 aaPredicted RBP15.12■□□□□ 0.01
SHKBP1-212ENST00000596163 ABCA4P78363 2273 aa15.12■□□□□ 0.01
SHKBP1-212ENST00000596163 TRAV27A0A087WT01 109 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 SH3PXD2BA1X283 911 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 A6NIZ1 184 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 AQP12BA6NM10 295 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 ABCD4O14678 606 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 DHHO43323 396 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 TMCC2O75069 709 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 PLAUP00749 431 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 PGA4P0DJD7 388 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 PGA3P0DJD8 388 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 RRM2P31350 389 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 RPL4P36578 427 aaKnown RBP15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 GPR4P46093 362 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 CAPZA2P47755 286 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 ZNF84P51523 738 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 RAP1BP61224 184 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 RPL27P61353 136 aaKnown RBP15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 RAP1AP62834 184 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 C3orf36Q3SXR2 165 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 ARMC4Q5T2S8 1044 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 ZNF813Q6ZN06 617 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 ZNF627Q7L945 461 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 AQP12AQ8IXF9 295 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 PIAS4Q8N2W9 510 aaPredicted RBP15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 OR13C2Q8NGS9 318 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 NANOS1Q8WY41 292 aaKnown RBP15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 ZNF837Q96EG3 531 aaPredicted RBP15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 FAM46AQ96IP4 442 aaKnown RBP15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 FOXB1Q99853 325 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 FOXC2Q99958 501 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 KCNS3Q9BQ31 491 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 BEX4Q9NWD9 120 aaPredicted RBP15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 ZNF346Q9UL40 294 aaKnown RBP15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 CREBBPQ92793 2442 aa15.11■□□□□ 0.01
SHKBP1-212ENST00000596163 UNC119BA6NIH7 251 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 CDC42EP2O14613 210 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 MGRN1O60291 552 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 OR10H3O60404 316 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 TRMUO75648 421 aaKnown RBP15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 NDUFB2O95178 105 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 IGHMP01871 453 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 QDPRP09417 244 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 CBR1P16152 277 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 CD53P19397 219 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 ARR3P36575 388 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 MAGEA2P43356 314 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 OMPP47874 163 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 ART1P52961 327 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 HIST3H3Q16695 136 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 DEFB113Q30KQ7 82 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 ZNF672Q499Z4 452 aaPredicted RBP15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 PGM2L1Q6PCE3 622 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 SLC22A25Q6T423 547 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 MEX3DQ86XN8 651 aaKnown RBP15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 NOXO1Q8NFA2 376 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 FBXW5Q969U6 566 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 RBP7Q96R05 134 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 CCL19Q99731 98 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 FUZQ9BT04 418 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 ALG12Q9BV10 488 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 MRPL13Q9BYD1 178 aaKnown RBP15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 DENND2DQ9H6A0 471 aaPredicted RBP15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 FAIMQ9NVQ4 179 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 GRHPRQ9UBQ7 328 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 POU2F3Q9UKI9 436 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 TACC2O95359 2948 aa15.1■□□□□ 0.01
SHKBP1-212ENST00000596163 SPG11Q96JI7 2443 aa15.09■□□□□ 0.01
SHKBP1-212ENST00000596163 TNFRSF11BO00300 401 aa15.09■□□□□ 0.01
SHKBP1-212ENST00000596163 ACOT8O14734 319 aa15.09■□□□□ 0.01
SHKBP1-212ENST00000596163 PTP4A3O75365 173 aa15.09■□□□□ 0.01
SHKBP1-212ENST00000596163 FARS2O95363 451 aaKnown RBP15.09■□□□□ 0.01
SHKBP1-212ENST00000596163 CD14P08571 375 aa15.09■□□□□ 0.01
SHKBP1-212ENST00000596163 RAP2AP10114 183 aa15.09■□□□□ 0.01
SHKBP1-212ENST00000596163 ACVR1BP36896 505 aa15.09■□□□□ 0.01
SHKBP1-212ENST00000596163 LIMS1P48059 325 aa15.09■□□□□ 0.01
SHKBP1-212ENST00000596163 HMGA2P52926 109 aa15.09■□□□□ 0.01
SHKBP1-212ENST00000596163 TOP3AQ13472 1001 aaPredicted RBP15.09■□□□□ 0.01
SHKBP1-212ENST00000596163 SEC23BQ15437 767 aa15.09■□□□□ 0.01
SHKBP1-212ENST00000596163 LRFN4Q6PJG9 635 aa15.09■□□□□ 0.01
SHKBP1-212ENST00000596163 DPPA2Q7Z7J5 298 aa15.09■□□□□ 0.01
SHKBP1-212ENST00000596163 WDFY1Q8IWB7 410 aa15.09■□□□□ 0.01
SHKBP1-212ENST00000596163 LRRC75AQ8NAA5 344 aa15.09■□□□□ 0.01
SHKBP1-212ENST00000596163 SYT14Q8NB59 555 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms